| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,344,650 – 11,344,721 |
| Length | 71 |
| Max. P | 0.797889 |
| Location | 11,344,650 – 11,344,721 |
|---|---|
| Length | 71 |
| Sequences | 5 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 76.33 |
| Shannon entropy | 0.42811 |
| G+C content | 0.27872 |
| Mean single sequence MFE | -12.08 |
| Consensus MFE | -7.06 |
| Energy contribution | -7.30 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.797889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11344650 71 - 22422827 ACAAUCCCUUUUGGAAUUGAACUUGACAUUUAAAUUGAUUGCUAAUUGAAAUGAUUAAGUUAAAAGGUCAU- .((((.((....)).))))((((((((((((.(((((.....))))).))))).)))))))..........- ( -13.80, z-score = -2.04, R) >droYak2.chrX 10962593 71 + 21770863 AAAAUCCCUUGCGGAAUUGAACUUGACAUUUAAAUUGAUUGCUAAUUGAAAUGAUUAAGUUAAAAGGUCAU- ......((((.........((((((((((((.(((((.....))))).))))).)))))))..))))....- ( -11.30, z-score = -1.22, R) >droSec1.super_36 66599 71 - 449511 ACAAUCCCUUUUGGAAUUGAACUUGACAUUUAAAUUGAUUGCUAAUUGAAAUGAUUAAGUUAAAAGGUCAU- .((((.((....)).))))((((((((((((.(((((.....))))).))))).)))))))..........- ( -13.80, z-score = -2.04, R) >droSim1.chrX 8753479 71 - 17042790 ACAAUCCCUUUUGGAAUUGAACUUGACAUUUAAAUUGAUUGCUAAUUGAAAUGAUUAAGUUAAAAGGUCAU- .((((.((....)).))))((((((((((((.(((((.....))))).))))).)))))))..........- ( -13.80, z-score = -2.04, R) >droVir3.scaffold_12822 3135408 55 + 4096053 ----------------UUAACUUUGGCAUUUAAUUUCAUAAUGAGAUGCGUCGAAUAA-UUAGGAAGACACU ----------------.........((((((.(((....))).))))))(((......-.......)))... ( -7.72, z-score = -0.98, R) >consensus ACAAUCCCUUUUGGAAUUGAACUUGACAUUUAAAUUGAUUGCUAAUUGAAAUGAUUAAGUUAAAAGGUCAU_ ...................((((((((((((.(((((.....))))).))))).)))))))........... ( -7.06 = -7.30 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:12 2011