| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,317,136 – 11,317,233 |
| Length | 97 |
| Max. P | 0.996999 |
| Location | 11,317,136 – 11,317,233 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 78.80 |
| Shannon entropy | 0.28829 |
| G+C content | 0.34292 |
| Mean single sequence MFE | -17.47 |
| Consensus MFE | -15.99 |
| Energy contribution | -16.10 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.02 |
| SVM RNA-class probability | 0.996999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11317136 97 + 22422827 UCCUUGUCCUUGUCAAGAACAAAAAAAAAAAACAGAAAAAAAAUAAAUACUAUUAACAGCUCAUUUGCUGACGAUCCAGCUGAUAAGCGACAUUUAC ....(((((((((((..........................((((.....))))..((((......))))..........))))))).))))..... ( -16.70, z-score = -3.01, R) >droEre2.scaffold_4690 14910710 79 - 18748788 GCCUUGUCCUUGUCAAAUA------AAA------------AAAUUAAUACUAUUAACAGCUCAUUUGCUGGCGAUCCAGCUGAUAAGCGGCUUUUAC .....((((((((((....------...------------................((((......))))((......))))))))).)))...... ( -17.80, z-score = -2.08, R) >droSim1.chrX_random 3173941 85 + 5698898 UCCUUGUCCUUGUCAAAAACAAAAAAAA--------AAUUAAAUAA-UACUAUUAACAGC---UUUGCUGGCGAUCCAGCUGAUAAGCGACAUUUAC ....(((((((((((.............--------.....((((.-...))))......---...(((((....)))))))))))).))))..... ( -17.90, z-score = -3.44, R) >consensus UCCUUGUCCUUGUCAAAAACAAAAAAAA________AA__AAAUAAAUACUAUUAACAGCUCAUUUGCUGGCGAUCCAGCUGAUAAGCGACAUUUAC .....((((((((((.........................................((((......))))((......))))))))).)))...... (-15.99 = -16.10 + 0.11)
| Location | 11,317,136 – 11,317,233 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 78.80 |
| Shannon entropy | 0.28829 |
| G+C content | 0.34292 |
| Mean single sequence MFE | -19.59 |
| Consensus MFE | -14.31 |
| Energy contribution | -15.42 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586610 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11317136 97 - 22422827 GUAAAUGUCGCUUAUCAGCUGGAUCGUCAGCAAAUGAGCUGUUAAUAGUAUUUAUUUUUUUUCUGUUUUUUUUUUUUGUUCUUGACAAGGACAAGGA .........((((((..(((((....)))))..)))))).................................((((((((((.....)))))))))) ( -19.50, z-score = -0.99, R) >droEre2.scaffold_4690 14910710 79 + 18748788 GUAAAAGCCGCUUAUCAGCUGGAUCGCCAGCAAAUGAGCUGUUAAUAGUAUUAAUUU------------UUU------UAUUUGACAAGGACAAGGC ......(((((((((..(((((....)))))..))))))((((((............------------...------...)))))).......))) ( -21.47, z-score = -2.46, R) >droSim1.chrX_random 3173941 85 - 5698898 GUAAAUGUCGCUUAUCAGCUGGAUCGCCAGCAAA---GCUGUUAAUAGUA-UUAUUUAAUU--------UUUUUUUUGUUUUUGACAAGGACAAGGA .....((((.(((.((((((((....)))))...---((((....)))).-..........--------.............))).))))))).... ( -17.80, z-score = -1.13, R) >consensus GUAAAUGUCGCUUAUCAGCUGGAUCGCCAGCAAAUGAGCUGUUAAUAGUAUUUAUUU__UU________UUUUUUUUGUUUUUGACAAGGACAAGGA ......(((((((((..(((((....)))))..))))))((((((....................................))))))..)))..... (-14.31 = -15.42 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:09 2011