| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,298,005 – 11,298,070 |
| Length | 65 |
| Max. P | 0.524513 |
| Location | 11,298,005 – 11,298,070 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 91.67 |
| Shannon entropy | 0.14133 |
| G+C content | 0.35526 |
| Mean single sequence MFE | -12.34 |
| Consensus MFE | -9.98 |
| Energy contribution | -11.18 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11298005 65 + 22422827 CGUCUUAGAGUUCAGAGAUAAUUGUGAAUUUUUAAUGCGGGUUAAGAUGAAACCCAAAAACAAAC .((.((((((((((.((....)).)))).)))))).))(((((.......))))).......... ( -12.00, z-score = -1.67, R) >droEre2.scaffold_4690 14891844 63 - 18748788 CGUCUUAGAGUUCAGAGAUAAUUGUGAAUU--AAUUGCGGGUUGAGAUGAAACCCAGAACAAAAC .........((((...(.((((((.....)--))))))(((((.......))))).))))..... ( -12.90, z-score = -1.90, R) >droYak2.chrX 10915514 63 - 21770863 CGUCUUAGAGUUCAGAGAUAAUUGUGAAUU--AAUUGCGGUUUAAGAUGGAACCCAAAACAAAAC ........((((((.((....)).))))))--..(((.(((((......))))))))........ ( -9.20, z-score = -0.57, R) >droSec1.super_36 21174 65 + 449511 CGUCUUAGAGUUCAGAGAUAAUUGUGAAUUUUAAUUGCGGGUUAAGAUGAAACCCAAACACAAAC .((.((((((((((.((....)).))))))))))..))(((((.......))))).......... ( -13.80, z-score = -2.19, R) >droSim1.chrX_random 3163872 65 + 5698898 CGUCUUAGAGUUCAGAGAUAAUUGUGAAUUUUAAUUGCGGGUUAAGAUGAAACCCAAACACAAAC .((.((((((((((.((....)).))))))))))..))(((((.......))))).......... ( -13.80, z-score = -2.19, R) >consensus CGUCUUAGAGUUCAGAGAUAAUUGUGAAUUUUAAUUGCGGGUUAAGAUGAAACCCAAAAACAAAC .((.((((((((((.((....)).))))))))))..))(((((.......))))).......... ( -9.98 = -11.18 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:04 2011