| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,041,553 – 11,041,648 |
| Length | 95 |
| Max. P | 0.899754 |
| Location | 11,041,553 – 11,041,648 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 88.70 |
| Shannon entropy | 0.22063 |
| G+C content | 0.49579 |
| Mean single sequence MFE | -31.55 |
| Consensus MFE | -25.85 |
| Energy contribution | -27.35 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.899754 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11041553 95 - 23011544 UUUGGCCAGUGUGAUAUGGCAGAGGUGGAGAAAUCUCUAGCUAAAAGUUGAAAGGCCUCCUCCGAUGGCCUCACUGUGCAAUCGAGUGCACAGAU ...(((((.((.((..((((((((((......)))))).))))...(((....)))....)))).)))))...(((((((......))))))).. ( -33.10, z-score = -2.13, R) >droAna3.scaffold_12916 12169063 75 - 16180835 --------------UCGGCUUGAGGUGGAGAAAUCUAUAGCUAAAAGUUGAAAGGCCUCUUUUGUUGGCCUCACUGUGCAGUCGAGUGC------ --------------((((((....(((((....))))).((....(((.((..((((.........)))))))))..))))))))....------ ( -22.20, z-score = -1.09, R) >droEre2.scaffold_4929 12236555 95 + 26641161 UUUGGCCAGUGUGAUAUGGCAGAGGUGGAGAAAUCUCUAGCUAAAAGUUGAAAGGCCUCCUCCGAUGGCCUCACUGUGCAAUCGAGUGCACAGAU ...(((((.((.((..((((((((((......)))))).))))...(((....)))....)))).)))))...(((((((......))))))).. ( -33.10, z-score = -2.13, R) >droYak2.chr2L 7435082 95 - 22324452 UUUGGCCAGUGUGAUAUGGCAGAGGUGGAGAAAUCUCUAGCUAAAAGUUGAAAGGCCUCCUCCGAUGGCCUCACUGUGCAAUCGAGUGCACAGAU ...(((((.((.((..((((((((((......)))))).))))...(((....)))....)))).)))))...(((((((......))))))).. ( -33.10, z-score = -2.13, R) >droSec1.super_3 6442703 95 - 7220098 UUUGGCCAGUGCGAUAUGGCAGAGGUGGAGAAAUCUCUAGCUAAAAGUUGAAAGGCCUCCUCCGAUGGCCUCACUGUGCAAUCGAGUGCACAGAU ...(((((...((...((((((((((......)))))).))))...(((....)))......)).)))))...(((((((......))))))).. ( -33.90, z-score = -2.16, R) >droSim1.chr2L 10839380 95 - 22036055 UUUGGCCAGUGCGAUAUGGCAGAGGUGGAGAAAUCUCUAGCUAAAAGUUGAAAGGCCUCCUCCGAUGGCCUCACUGUGCAAUCGAGUGCACAGAU ...(((((...((...((((((((((......)))))).))))...(((....)))......)).)))))...(((((((......))))))).. ( -33.90, z-score = -2.16, R) >consensus UUUGGCCAGUGUGAUAUGGCAGAGGUGGAGAAAUCUCUAGCUAAAAGUUGAAAGGCCUCCUCCGAUGGCCUCACUGUGCAAUCGAGUGCACAGAU ....((((........))))..((.(((((....))))).))..........(((((.........)))))..(((((((......))))))).. (-25.85 = -27.35 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:26 2011