| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,282,886 – 11,282,994 |
| Length | 108 |
| Max. P | 0.728379 |
| Location | 11,282,886 – 11,282,994 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 79.54 |
| Shannon entropy | 0.36291 |
| G+C content | 0.51975 |
| Mean single sequence MFE | -33.60 |
| Consensus MFE | -19.23 |
| Energy contribution | -20.07 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.728379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11282886 108 - 22422827 ---GCAACAACAACAGCGCACCGGAAACGGAAAUGG--GCGACGCUUGGCCCACAA----AAGCGAGAAGGCCGAGCGCCU---UAAGCGUCUUAAGUAAGUA-ACGAUUCGUUAAAAAGC ---((..........((((.(((....)))...(((--(.(.(((((((((..(..----......)..))))))))))))---)).))))..........((-(((...)))))....)) ( -33.40, z-score = -1.79, R) >droAna3.scaffold_13047 622191 119 + 1816235 AAUGCAAUGGCUGCCACGCACCGGAAGCGGAAGCGGAAGCGGGCGGCGGCCCACAAACUCAAGCGAGGAAAACAGGGGCCCAUGUACUAGUACUAAAUACACACAAUAUAUGUAACACA-- ..(((((((((((((.....(((....)))..((....)).))))))(((((.....(((....)))........))))))))(((....))).................)))).....-- ( -38.12, z-score = -1.94, R) >droEre2.scaffold_4690 14876958 105 + 18748788 ------GCAACAACAACACACCGGAAACGGAAAUGG--GCGACGCUUGGCCCACAA----AAGCGAGGAGGCCGAGCGCCU---UAAGCGUCUUAAGUAAGUA-ACGAUUCGUUAAAAAGG ------..............(((....))).(((((--(((.(((((((((..(..----......)..))))))))).((---((((...))))))......-.)).))))))....... ( -32.00, z-score = -2.04, R) >droYak2.chrX 10900421 104 + 21770863 ------GCAACAACAACACACCGGAAACGGAAAUGG--GCGACGCUUGGCCCACAA----AAGCGAGGAGGCCGAGCGCCU---UAAGCGUCUUAAGUAAGUA-ACGAUUCGUUAAAAGG- ------..............(((....))).(((((--(((.(((((((((..(..----......)..))))))))).((---((((...))))))......-.)).))))))......- ( -32.00, z-score = -2.03, R) >droSec1.super_36 6204 108 - 449511 ---GCAACAACAACAGCGCACCGGAAACGGAAAUGG--GCGACGCUUGGCCCACAA----AAGCGAGAAGGCCGAGCGCCU---UAAGCGUCUUAAGUAAGAA-ACGAUUCGUUAUAAAGG ---........(((.((((.(((....)))...(((--(.(.(((((((((..(..----......)..))))))))))))---)).)))).........(((-....))))))....... ( -32.00, z-score = -1.65, R) >droSim1.chrX 8712951 108 - 17042790 ---GCAACAACAACAGCGCACCGGAAACGGAAAUGG--GCGACGCUUGGCCCACAA----AAGCGAGAAGGCCGAGCGCCU---UAAGCGUCUUAAGUAAGUA-ACGAUUCGUUAUAAAGG ---............((((.(((....)))...(((--(.(.(((((((((..(..----......)..))))))))))))---)).)))).........(((-(((...))))))..... ( -34.10, z-score = -2.10, R) >consensus ___GCAACAACAACAACGCACCGGAAACGGAAAUGG__GCGACGCUUGGCCCACAA____AAGCGAGAAGGCCGAGCGCCU___UAAGCGUCUUAAGUAAGUA_ACGAUUCGUUAAAAAGG ...........(((......(((....)))..........(((((((((((..(............)..))))))))((........)))))...................)))....... (-19.23 = -20.07 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:01 2011