| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,280,648 – 11,280,749 |
| Length | 101 |
| Max. P | 0.876933 |
| Location | 11,280,648 – 11,280,749 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 84.27 |
| Shannon entropy | 0.24601 |
| G+C content | 0.30993 |
| Mean single sequence MFE | -20.32 |
| Consensus MFE | -13.79 |
| Energy contribution | -13.97 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.876933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11280648 101 - 22422827 GCAGCAAAACUUUUUGGUAGGUGAAUA-UUUGAAAAAAUAAUACACAAAGAAACACAAUUUAUUAACCGGAAAUAACUGAUUCCGCUUGGUAAUGCUAAAUA ..((((....((((((....(((..((-(((....))))).))).))))))........(((((((.(((((........))))).)))))))))))..... ( -18.90, z-score = -2.09, R) >droEre2.scaffold_4690 14874620 94 + 18748788 GUAGCAAAAGUGUUUUGUUGGUGAAUAUUUUGAAAAAGGAACAC--------AUACAAUUUAUUAACCGGAAUUAACUGAUUCCGUUUGGUAGUGCUGAGUA .(((((...(((((((.(..(........)..)....)))))))--------.......(((((((.(((((((....))))))).)))))))))))).... ( -23.20, z-score = -2.38, R) >droSec1.super_36 3985 93 - 449511 GAAGCAAAACUUUUUGGUAGGUGAAUA-UUUAAAAGAACAAUAC--------ACACAAUUUAUUAAUCGGAAUUAACUGAUUCCGCUGGGUAAUGCUAAAUA ..((((...(((((..(((......))-)..)))))........--------.......(((((...(((((((....)))))))...)))))))))..... ( -17.10, z-score = -1.87, R) >droSim1.chrX 8710704 93 - 17042790 ACAGCAAAACUUUUUGGUAGGUGAAUA-UUUGAAAGAAUAAUGC--------ACACAAUUUAUUAACCGGAAUUAACUGAUUCCGCUUGGUAAUGCUAAAUA ............(((((((.(((..((-(((....)))))...)--------)).....(((((((.(((((((....))))))).)))))))))))))).. ( -22.10, z-score = -3.06, R) >consensus GCAGCAAAACUUUUUGGUAGGUGAAUA_UUUGAAAAAAUAAUAC________ACACAAUUUAUUAACCGGAAUUAACUGAUUCCGCUUGGUAAUGCUAAAUA ..((((..((((......)))).....................................(((((((.(((((((....))))))).)))))))))))..... (-13.79 = -13.97 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:34:00 2011