| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,261,746 – 11,261,837 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 11,261,746 – 11,261,837 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.73 |
| Shannon entropy | 0.51075 |
| G+C content | 0.58616 |
| Mean single sequence MFE | -36.16 |
| Consensus MFE | -22.90 |
| Energy contribution | -23.86 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.17 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 11261746 91 + 22422827 UUGCAGUUGCAAGGUUGCCCCAAACUCCAGCGCGAGUUCCAUUGAUGCCACUGGCGGGGAACCACCUGGACUGCUCCUUCUUU-UAGCAAGC---------------------------- ..((((((...((((..((((.(((((......)))))........(((...)))))))....)))).)))))).........-........---------------------------- ( -27.30, z-score = 0.09, R) >droEre2.scaffold_4690 14856088 120 - 18748788 ACGCAGUUGCAAGGAUGCUCCGAACUCCAGCGGGAGUUCCAUGGAUGCCGCUGGCGGAGAACCACCCAGACCGCUUCUUCUCCGUAGCCGGCGCCGAUCGCCUAUCCAGCAAUCGCCGUC ..((.(((((..((((((...(((((((....)))))))..(((.((((((((.(((((((................)))))))))).))))))))...))..)))).))))).)).... ( -45.39, z-score = -1.20, R) >droYak2.chrX 10879442 120 - 21770863 CCGCAGUUGCAAGGAUGCCCCGAACUGCAGCGGGAGUUCCAUGGAUGCCGCUGGCGGGGAAUCACCCAAACUGCUUCUUCUCCUUAGCCGGCGUCGAUCGCCGAUCCAGCAAUCGUGUUC .(((.(((((..(((.((((((........)))).))))).(((((...(((((.((((((................)))))))))))(((((.....))))))))))))))).)))... ( -44.09, z-score = -0.59, R) >droSec1.super_15 1940137 101 + 1954846 UUGCAGUUGCAAGGAUGCCCCGAACUCCAGCGCGAGUUCCAUGGAUGUCGCUGGCGGAGAACAACCUGGACUGCUUCUCCACC-UCCUGCACUUUAGCAAUC------------------ (((((((.(((.(((.(((.(((..((((((....))....))))..)))..)))((((((((........)).))))))...-)))))))))...))))..------------------ ( -32.60, z-score = -1.15, R) >droSim1.chrX 8690977 101 + 17042790 UUGCAGUUGCAAGGAUGCCCUGAACUCCAGCGCGAGUUCCAUGGAUGCCGCUGGCGGAGAACAACCUGGACUGCUUCUCCACC-UCCUGCACAUUAGCAAUC------------------ (((((((((((.(((...........((((((.(...((....))..))))))).((((((((........)).))))))...-))))))).))).))))..------------------ ( -31.40, z-score = -0.71, R) >consensus UUGCAGUUGCAAGGAUGCCCCGAACUCCAGCGCGAGUUCCAUGGAUGCCGCUGGCGGAGAACCACCUGGACUGCUUCUUCUCC_UAGCCCGCGUCAACAACC__________________ ..((((((...(((...(((((....((((((.(...((....))..)))))))))))).....))).)))))).............................................. (-22.90 = -23.86 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:53 2011