| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,249,325 – 11,249,423 |
| Length | 98 |
| Max. P | 0.565153 |
| Location | 11,249,325 – 11,249,423 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 89.10 |
| Shannon entropy | 0.18297 |
| G+C content | 0.48655 |
| Mean single sequence MFE | -24.22 |
| Consensus MFE | -17.46 |
| Energy contribution | -19.06 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565153 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11249325 98 - 22422827 CACACGAAAAUCUCUAGCGUUG---GCCGCAGUUUAU--UUAUAGCUGCCCGAUUUCCAGAUAACCCCGCCCGCCAUUUAUCACGCAAUGGCGCUCGUUAUUU ...((((..((((.....((((---(..((((((...--....)))))))))))....)))).........(((((((........))))))).))))..... ( -23.10, z-score = -1.53, R) >droEre2.scaffold_4690 14842674 103 + 18748788 CAUACAGAAAUCAACAGCGUUGGCUGCAUCAGUUUAUUAUUAGAGCUCCACGAUUUCCAGAUAACCCCGCAUGCCAUUUAUCACACAAUGGCGCUCGUUAUUU ......((((((..((((....))))....(((((.......)))))....)))))).(((((((...((..((((((........))))))))..))))))) ( -22.40, z-score = -2.07, R) >droYak2.chrX 10867557 101 + 21770863 CAUACAGAAAUCUCCAGCGUUGGCUGCCGCAGUUUAU--UUUUAGCUCCCCGAUUUCCAGAUAACCCCGCCUGCCAUUUAUCACGCAAUGGCGCUCGUUAUUU ......((((((..((((....))))..(.((((...--....)))).)..)))))).(((((((...((..((((((........))))))))..))))))) ( -20.80, z-score = -0.88, R) >droSec1.super_15 1926747 98 - 1954846 CCCACGGAAAUCUCCAUCGUUG---GCCGCAGUUUAU--UUAUAGCUGCCCGAUUUCCAGAUAACCCCGCCCGCCAUUUAUCACGCUAUGGCGCUCGUUAUUU .....(((((((.(((....))---)..((((((...--....))))))..)))))))(((((((......((((((..........))))))...))))))) ( -27.90, z-score = -3.16, R) >droSim1.chrX 8677536 98 - 17042790 CCCACGGAAAUCUCCAGCGUUG---GCCGCAGUUUAU--UUAUAGCUGCCCGAUUUCCAGAUAACCCCGCCCGCCAUUUAUCACGCUAUGGCGCUCGUUAUUU .....(((((((....((....---)).((((((...--....))))))..)))))))(((((((......((((((..........))))))...))))))) ( -26.90, z-score = -2.35, R) >consensus CACACGGAAAUCUCCAGCGUUG___GCCGCAGUUUAU__UUAUAGCUGCCCGAUUUCCAGAUAACCCCGCCCGCCAUUUAUCACGCAAUGGCGCUCGUUAUUU .....(((((((......((.....)).((((((.........))))))..)))))))(((((((...((..((((((........))))))))..))))))) (-17.46 = -19.06 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:52 2011