| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,242,296 – 11,242,398 |
| Length | 102 |
| Max. P | 0.944878 |
| Location | 11,242,296 – 11,242,398 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.47 |
| Shannon entropy | 0.43046 |
| G+C content | 0.58519 |
| Mean single sequence MFE | -42.00 |
| Consensus MFE | -22.96 |
| Energy contribution | -24.52 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944878 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11242296 102 - 22422827 CCGUUUGCCGACCUGCCGCCAUUGAUGACGCUCCUCGUGGAUAUAUUCACCGGGGGCGACUU------------------UCGCCUGGCGGCCAGCUUCUUCGGAUGCGGAAUCCUGUAG ((((...((((.(((((((((.(((...(((((((.(((((....))))).)))))))....------------------)))..)))))).))).....))))..)))).......... ( -42.70, z-score = -2.63, R) >droEre2.scaffold_4690 14835910 117 + 18748788 ACGUUUCCCAAUCGGCCGCCAUUGAUGACAUUCCUCUUGGAUAUCUUCACCUGGGGCGACU---GCGUUAAAGGAGAAGGGCGAAUCAUGGGCAGCUUUUUGGGACGGGGCAUGCUGAGG .....((((((..(((.(((..((((.....(((....)))..(((((.(((..((((...---.))))..))).)))))....))))..))).)))..))))))(((......)))... ( -38.40, z-score = -0.21, R) >droYak2.chrX 10860710 120 + 21770863 CCGUUUCCCAACCUGCCGCCGUUGAUGAUGCUCCUCGUGGAUAUCUUCACCUGGGGCAACCUGGGCCCCAACUGAGAUGAACGCCUUAUUGCCGGCUUUCUUGGAUGGGGCAUGCUGAAG .......(((...((((.(((.(((.((((.(((....))))))).)))..)))))))...)))((((((.(..(((.....(((........)))..)))..).))))))......... ( -43.30, z-score = -1.84, R) >droSec1.super_15 1919841 102 - 1954846 CCGUUUGCCGACCUGCCGCCAUUGAUGACGCUCCUCGUGGAUAUCUUCACCGGGGGCGACUU------------------CCUCUUGGCGGCCAGUUUCUUCGGAUGCGGAAUCUUGAAG ((((...((((.(((((((((..((.(((((((((.(((((....))))).)))))))...)------------------).)).)))))).))).....))))..)))).......... ( -43.30, z-score = -3.34, R) >droSim1.chrX 8670742 102 - 17042790 CCGUUUGCCGACCUGCCGCCAUUGAUGACGCUCCUCGUGGAUAUCUUCACCGGGGGCGACUU------------------CCUCCUGGCGGCCAGCUUCUUCGGAUGCGGAAUCUUGAAG ((((...((((.(((((((((..((.(((((((((.(((((....))))).)))))))...)------------------).)).)))))).))).....))))..)))).......... ( -42.30, z-score = -2.85, R) >consensus CCGUUUGCCGACCUGCCGCCAUUGAUGACGCUCCUCGUGGAUAUCUUCACCGGGGGCGACUU__________________CCGCCUGGCGGCCAGCUUCUUCGGAUGCGGAAUCCUGAAG ((((...((((.((((((((((....).(((((((.(((((....))))).)))))))...........................)))))).))).....))))..)))).......... (-22.96 = -24.52 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:51 2011