Locus 1411

Sequence ID dm3.chr2L
Location 11,030,040 – 11,030,098
Length 58
Max. P 0.787071
window1925

overview

Window 5

Location 11,030,040 – 11,030,098
Length 58
Sequences 11
Columns 58
Reading direction reverse
Mean pairwise identity 88.71
Shannon entropy 0.23332
G+C content 0.70063
Mean single sequence MFE -24.95
Consensus MFE -21.58
Energy contribution -20.96
Covariance contribution -0.62
Combinations/Pair 1.29
Mean z-score -1.48
Structure conservation index 0.86
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.69
SVM RNA-class probability 0.787071
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 11030040 58 - 23011544
ACCGCUCCAUCGCCCACGGAGCAGGCCAAGAGCCAAAUGGCCGCCGUGGUGGCAGCAG
...((((((....((((((....(((((.........))))).))))))))).))).. ( -25.60, z-score =  -2.00, R)
>droEre2.scaffold_4929 12225077 58 + 26641161
ACCGCUCCGUCGCCCACGGAGGAGGCCAAGAGCCAAAUGGCCGCCGUGGUGGCAGCAG
...(((..((((((.((((....(((((.........))))).))))))))))))).. ( -26.50, z-score =  -1.84, R)
>droYak2.chr2L 7423329 58 - 22324452
ACCGCUCCAUCGCCCACGGAGCAGGCCAAGAGCCAAAUGGCCGCCGUGGUGGCAGCAG
...((((((....((((((....(((((.........))))).))))))))).))).. ( -25.60, z-score =  -2.00, R)
>droSec1.super_3 6431413 58 - 7220098
ACCGCUCCAUCGCCCACGGAGCAGGCCAAGAGCCAAAUGGCCGCCGUGGUGGCAGCAG
...((((((....((((((....(((((.........))))).))))))))).))).. ( -25.60, z-score =  -2.00, R)
>droSim1.chr2L 10828331 58 - 22036055
ACCGCUCCAUCGCCCACGGAGCAGGCCAAGAGCCAAAUGGCCGCCGUGGUGGCAGCAG
...((((((....((((((....(((((.........))))).))))))))).))).. ( -25.60, z-score =  -2.00, R)
>dp4.chr4_group3 6355085 58 - 11692001
GCAGCCCAGUCGCCCACGGAGCAGGCCAAGAGCCAAAUGGCCGCUGUGGUGGCGGCCG
........((((((..((.(((.(((((.........)))))))).))..)))))).. ( -25.60, z-score =  -0.83, R)
>droPer1.super_1 7846210 58 - 10282868
GCAGCCCAGUCGCCCACGGAGCAGGCCAAGAGCCAAAUGGCCGCUGUGGUGGCGGCCG
........((((((..((.(((.(((((.........)))))))).))..)))))).. ( -25.60, z-score =  -0.83, R)
>droAna3.scaffold_12916 12156707 58 - 16180835
GCAGCGCCUUCGCCCACGGAGCAGGCCAAGAGCCAAAUGGCCGCCGUGGUGGCCGCCG
...(((((.....((((((....(((((.........))))).)))))).)).))).. ( -24.60, z-score =  -0.49, R)
>droVir3.scaffold_12963 12180052 58 + 20206255
GCGGCGCAGUCACCCACAGAGCAGGCCAAAAGCCAAAUGGCCGCUGUGGUGGCCGCCG
.(((((..((((((.((((....(((((.........))))).))))))))))))))) ( -30.10, z-score =  -3.00, R)
>droMoj3.scaffold_6500 31700687 58 + 32352404
GCGUCCCAGUCACCCACAGAGCAGGCCAAGAGCCAAAUGGCCGCCGUGGUGGCCGCCG
(((.....((((((.((.(.((.(((((.........))))))))))))))))))).. ( -20.80, z-score =  -1.17, R)
>droGri2.scaffold_15252 6096399 58 + 17193109
GCAGCGCAAUCACCCACGGAACAGGCCAAGAGCCAAAUGGCCGCUGUUGUGGCCGCCG
................(((....(((.....)))....((((((....)))))).))) ( -18.90, z-score =  -0.15, R)
>consensus
GCCGCUCCAUCGCCCACGGAGCAGGCCAAGAGCCAAAUGGCCGCCGUGGUGGCAGCCG
...(((...(((((.((((....(((((.........))))).))))))))).))).. (-21.58 = -20.96 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:25 2011