| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,205,751 – 11,205,871 |
| Length | 120 |
| Max. P | 0.663176 |
| Location | 11,205,751 – 11,205,871 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.83 |
| Shannon entropy | 0.11036 |
| G+C content | 0.48167 |
| Mean single sequence MFE | -37.18 |
| Consensus MFE | -32.86 |
| Energy contribution | -32.90 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663176 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11205751 120 - 22422827 CUUAGCUUGACCACCGGAAAAUCUCGCUGUGGGAAAAAUCGUCAUCGAGUUUCCCCUCGGCUUCUUCUUUGAUUUCCGCGUUCAGGUGAGUCUACUUGAUUUGGCCAUGAAUGAAAAAGC ....((((......((((((.....((((.((((((..(((....))).))))))..)))).((......))))))))((((((((((((((.....))))).))).))))))...)))) ( -35.50, z-score = -1.82, R) >droEre2.scaffold_4690 14806505 120 + 18748788 CUUAGCUCGACCACCGGAAAAUCUCGCUGUGGGAAAAGUCGUCAUCGAAUUUCCCCUCGGCUUCUUCUUUGAUUUCCGCGUGCAGGUGAGUCCACUGGAUUGGGCCAUGAAUGAAAAAGC ....((((((((((((((((.....((((.((((((..(((....))).))))))..)))).((......)))))))).))...((((....)))))).))))))............... ( -35.30, z-score = -0.50, R) >droYak2.chrX 10831767 120 + 21770863 CUUAGCUUGACCAGCGGAAAAUCUCGCUGUGGGAAAAAUCGUCGUCGAGUUUCCCCUCGGCUUCUAUUUUGAUUUCCGUGUUCAGGUGAGUCUACUUGAUUUGGCCAUGAAUGAAAAAGC ....((((.....(((((((.....((((.((((((..(((....))).))))))..)))).((......)))))))))(((((((((((((.....))))).))).)))))....)))) ( -35.50, z-score = -1.79, R) >droSec1.super_15 1890036 120 - 1954846 CUUAGCUUGACCACCGGAAAAUCUCGCUGGGGGAAAAAUCGUCAUCGAGUUUCCCCUCGGCUUCUUCUUUGAUUUCCGCGUUCAGGUGAGUCUACUUGAUUUGGCCAUGGAUGAAAAAGC ....((((......((((((.....(((((((((((..(((....))).))))))).)))).((......))))))))((((((((((((((.....))))).))).))))))...)))) ( -39.00, z-score = -1.77, R) >droSim1.chrX_random 3144954 120 - 5698898 CCUAGCUUGACCACCGGAAAAUCUCGCUGGGGGAAAAAUCGUCAUCGAGUUUCCCCUCGGCUUCUUCUUUGAUUUCCGCGUUCAGGUGAGUCUACUUGAUUUGGCCCUGAAUGAAAGAGU ....((((......((((((.....(((((((((((..(((....))).))))))).)))).((......))))))))((((((((.(((((.....)))))...))))))))...)))) ( -40.60, z-score = -2.08, R) >consensus CUUAGCUUGACCACCGGAAAAUCUCGCUGUGGGAAAAAUCGUCAUCGAGUUUCCCCUCGGCUUCUUCUUUGAUUUCCGCGUUCAGGUGAGUCUACUUGAUUUGGCCAUGAAUGAAAAAGC ....((((......((((((.....((((.(((.(((.(((....))).))).))).)))).((......))))))))((((((((((((((.....))))).))).))))))...)))) (-32.86 = -32.90 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:50 2011