| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,181,626 – 11,181,717 |
| Length | 91 |
| Max. P | 0.566837 |
| Location | 11,181,626 – 11,181,717 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.46 |
| Shannon entropy | 0.37770 |
| G+C content | 0.35775 |
| Mean single sequence MFE | -22.97 |
| Consensus MFE | -9.85 |
| Energy contribution | -10.02 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11181626 91 + 22422827 GGAAAAUAUUGCUGACAAGC-CAAAAGCACAAGAAAAUUUACGAACGAGUGA-AUUUUGUGCG--------GUACUACCAU-AUAUAUUUCGUAGUGAGUAU----------------- .........((((.((....-.....((((((...(((((((......))))-)))))))))(--------(.....))..-............)).)))).----------------- ( -20.00, z-score = -2.18, R) >droSim1.chrX_random 3138471 92 + 5698898 GGAAAAUAUUGCUGACAAGC-GAAAAGCACCAGAAAAUUUACGAACGAGUGA-AUUUUGUGCG--------GUGGUAGUAUCAUACAUUUUGUAGUGAGUAU----------------- .........((((.((..((-((((..(((((.(((((((((......))))-))))).)..)--------)))(((......))).)))))).)).)))).----------------- ( -21.40, z-score = -1.88, R) >droSec1.super_15 1866832 92 + 1954846 GGAAAAUAUUGCUGACAAGC-GAAAAGCACUAGAAAAUUUACGAACGAGUGA-AUUUUGUGCG--------GUGGUAGUAUCAUAUAUUUUGUAGUGAGUAU----------------- .........((((.((..((-((((.((((...(((((((((......))))-))))))))).--------(((((...)))))...)))))).)).)))).----------------- ( -21.00, z-score = -2.10, R) >droYak2.chrX 10808709 90 - 21770863 GGAAAAUAUUGCUGACAAGCCAAAAAGCACCAGAAAAUUUACGAACAAGUGA-AUUUUGUGCG--------GU---AGUAUCAUAUAUUUCGUAGUGAGUAU----------------- .(((((((((((((....((......))..((.(((((((((......))))-))))).))))--------))---)))))......))))...........----------------- ( -18.70, z-score = -1.81, R) >droEre2.scaffold_4690 14782304 93 - 18748788 GGAAAAUAUAGCUGACAAGCCAAAAAGCACCACAAAAUUUACGAACGAGUGA-AUUUUGUGCG--------GUAGCAGUAUCAUAUAUUUUGUAGUGAGUAU----------------- ..(((((((((((....)))......((((((((((((((((......))))-)))))))..)--------)).)).......))))))))...........----------------- ( -22.50, z-score = -2.77, R) >droAna3.scaffold_13248 2738476 119 + 4840945 CCAAAAUAUUGCUGACAAGCCGAAAAGCGGCGGAAAAUUUACGAACAAGAAAUACUUUCUGUGUUUUGUGUGUGUGAAUGCGAUAUAUUUUGUGUAGUUUGAUGUCGUGCUGCAGUAUA .(((((((((((......((((.....)))).....(((((((.(((.(((((((.....))))))).))).))))))))))))))..))))((((((.((....)).))))))..... ( -34.20, z-score = -2.85, R) >consensus GGAAAAUAUUGCUGACAAGC_GAAAAGCACCAGAAAAUUUACGAACGAGUGA_AUUUUGUGCG________GUGGUAGUAUCAUAUAUUUUGUAGUGAGUAU_________________ ..(((((((.(((....)))......((((.((((...((((......))))..))))))))......................)))))))............................ ( -9.85 = -10.02 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:48 2011