| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,174,454 – 11,174,564 |
| Length | 110 |
| Max. P | 0.509433 |
| Location | 11,174,454 – 11,174,564 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 96.36 |
| Shannon entropy | 0.06657 |
| G+C content | 0.42909 |
| Mean single sequence MFE | -29.14 |
| Consensus MFE | -28.26 |
| Energy contribution | -28.06 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.06 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509433 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11174454 110 + 22422827 CCAGAUCGUUUUCAUUUUGUGCCGCAGAAAGUGGCAAAUAAUCUUGAAGUUGUGUUUAUGAAAAGUGUACAAGGACUCUCUCCCAGGAAUUGGCCAAGAUGAUGAAGGCA .......(((((((((...((((((.....))))))....((((((.((((.(((.(((.....))).)))..)))).....((((...)))).))))))))))))))). ( -27.50, z-score = -0.69, R) >droEre2.scaffold_4690 14774374 110 - 18748788 CCAGAUCGUUUUCAUUUAAUGCCACAGAAAGUGGCAAAUAAUCUUGAAGUUGUGUGUAUGAAAAGUGUGCAAGGACUCUCUCCCAGGAAUUGGCCAAGAUGAUGAAGGCA .......(((((((((...((((((.....))))))....((((((.((((.((..(((.....)))..))..)))).....((((...)))).))))))))))))))). ( -31.00, z-score = -1.83, R) >droYak2.chrX 10801662 110 - 21770863 CCAGAUCGUUUUCAUUUUCUGCCGCAAAAAGUGGCAAAUAUUCUUGAAGUUGUGUGUAUGAAAAGUGUGCAAGGACUCUCUCCCAGGAAUUGGCCAAGAUGAUGAAGGCA .......(((((((((.((((((((.....)))))....(((((((......((..(((.....)))..)).(((.....))))))))))......))).))))))))). ( -31.10, z-score = -1.52, R) >droSec1.super_15 1859907 110 + 1954846 CCAGAUCGUUUUCAUUUUGUGCCGCAGAAAGUGGCAAAUAAUCUUGAAGUUGUGUGUAUGAAAAGUGUGCAAGGACUCUCUCCCAGGAAUUGGCCAAGAUGAUGGAGGCA .......(((((((((...((((((.....))))))....((((((.((((.((..(((.....)))..))..)))).....((((...)))).))))))))))))))). ( -30.00, z-score = -0.81, R) >droSim1.chrX_random 327480 110 + 5698898 CCAGAUCGUUUUCAUUUUGUGCCGCAGAAAGUGGCAAAUAAUCUUGAAGUUGUGUGUAUGAAAAGUGUUCAAGGACUCUCUCCCAGGAAUUGGCCAAGAUGAUGGAGGCA .......(((((((((...((((((.....))))))....((((((.....(.((.(.((((.....)))).).)).)....((((...)))).))))))))))))))). ( -26.10, z-score = 0.23, R) >consensus CCAGAUCGUUUUCAUUUUGUGCCGCAGAAAGUGGCAAAUAAUCUUGAAGUUGUGUGUAUGAAAAGUGUGCAAGGACUCUCUCCCAGGAAUUGGCCAAGAUGAUGAAGGCA .......(((((((((...((((((.....))))))....((((((.((((.((..(((.....)))..))..)))).....((((...)))).))))))))))))))). (-28.26 = -28.06 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:45 2011