| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,158,520 – 11,158,619 |
| Length | 99 |
| Max. P | 0.895253 |
| Location | 11,158,520 – 11,158,619 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 70.99 |
| Shannon entropy | 0.45337 |
| G+C content | 0.38062 |
| Mean single sequence MFE | -25.48 |
| Consensus MFE | -14.30 |
| Energy contribution | -16.18 |
| Covariance contribution | 1.87 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.895253 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11158520 99 - 22422827 UAAUAAUUUGAUUACUUCGGCCAUAGUUGGCUGUAAGAGG--------CUGUUUUGGGGUCAUCCGUGAUGGAUGUUGGGGUCACCAAAA------------AACGAAUAUAGCUUAAU ..............(((((((((....)))))).)))(((--------((((((((....(((((.....)))))((((.....))))..------------..)))).)))))))... ( -28.80, z-score = -2.17, R) >droEre2.scaffold_4690 14760826 87 + 18748788 AAAUAAUUUGAUUACUUGGUUAAUAG-UCGCUGUAAGACA---------GCUUUUGGGGUCACACGUGAUGGAUGUUGGGGUCACCGCAUAACUAAU---------------------- ...............(((((((....-..((((.....))---------))...((.(((.((.(.((((....)))).))).))).))))))))).---------------------- ( -18.10, z-score = -0.03, R) >droSec1.super_15 1847483 117 - 1954846 UAAUAAUUUGAUUACUUCGGUCAUAG-UUGCUGCAAGACAAGUUGCUGCUGUUUUGGGGUCACAUGUGAUGGAUGUUGGGGUCAACAAAACCAAAAAAA-AGAAGGAAAAUAGCUAAAU ..............((((.(((((((-(.(((.(((((((.((....))))))))).))).)).))))))((.(((((....)))))...)).......-.)))).............. ( -27.50, z-score = -1.45, R) >droSim1.chrX 8620464 109 - 17042790 UAAUAAUUUGAUUACUUCGGUCAUAG-UGGCUGCAAGACA---------UGUUUUGGGGUCACAUGUGAUGGAUGUUGGGGUCAACAAAAACAAAAAAAUAGAAGGAAAAUAGCUAAAU .......(((((..(.((.(((((((-(((((.(((((..---------..))))).)))))).)))))).))....)..))))).................................. ( -27.50, z-score = -3.58, R) >consensus UAAUAAUUUGAUUACUUCGGUCAUAG_UGGCUGCAAGACA_________UGUUUUGGGGUCACACGUGAUGGAUGUUGGGGUCAACAAAAACAAAAA_____AAGGAAAAUAGCUAAAU ........((((..(.((.(((((...(((((.(((((((.........))))))).)))))...))))).))....)..))))................................... (-14.30 = -16.18 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:41 2011