Locus 14101

Sequence ID dm3.chrX
Location 11,154,940 – 11,155,036
Length 96
Max. P 0.801335
window19394 window19395

overview

Window 4

Location 11,154,940 – 11,155,036
Length 96
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 64.26
Shannon entropy 0.61172
G+C content 0.49485
Mean single sequence MFE -21.82
Consensus MFE -7.48
Energy contribution -7.24
Covariance contribution -0.24
Combinations/Pair 1.12
Mean z-score -1.92
Structure conservation index 0.34
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.73
SVM RNA-class probability 0.801335
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 11154940 96 + 22422827
-------GAAGCAACCGAAAACCACCUUCCCCGCCGACCACCUUAUCA-CGUAAGAUUCAGCAACAUCUGCUGCCA--AAAUGCUUAAGGCAAUUCAAUUUAAUUA
-------((((..............))))...(((......(((((..-.)))))...(((((.....)))))...--..........)))............... ( -12.04, z-score =  -0.60, R)
>droPer1.super_17 1720533 106 - 1930428
GCCGCUGCCGCUUCCUCUUCCCCGCCUUCCCCUACAGCAGCCAUACGGGUACUCGUAGCGGCAACAGCUGCUGCUGCCAAAUGCUGGCGGCAAUUCAAUUUAAUUA
(((((....((............)).........((((((((.....)))....(((((((((.....)))))))))....))))))))))............... ( -33.60, z-score =  -1.15, R)
>dp4.chrXL_group1e 9246176 106 - 12523060
GCCGCUGCCGCUUCCUCUUUCCCGCCUUCCCCUACAGCAGCCAUACGGGUACUCGUAGCGGCAACAGCUGCUGCUGCCAAAUGCUGGCGGCAAUUCAAUUUAAUUA
((((((((((((........((((.....................)))).......))))))).((((.((....)).....)))))))))............... ( -33.86, z-score =  -1.26, R)
>droSec1.super_15 1844035 77 + 1954846
--------------------------UCCCCCGCCAACCUUCUUACCA-CGUAAGAUCCAGCAACAUCUGCUGCCA--AAAUGCUUAAGGCAAUUCAAUUUAAUUA
--------------------------......(((.....((((((..-.))))))..(((((.....)))))...--..........)))............... ( -14.80, z-score =  -3.52, R)
>droSim1.chrX 8617004 90 + 17042790
-------------AAAAACCCCCCCGUCCCCCGCCGACCUUCUUACCA-CGUAAGAUCCAGCAACAUCUGCUGCCA--AAAUGCUUAAGGCAAUUCAAUUUAAUUA
-------------...................(((.....((((((..-.))))))..(((((.....)))))...--..........)))............... ( -14.80, z-score =  -3.10, R)
>consensus
_____________ACUCAUCCCCGCCUUCCCCGCCAACCGCCUUACCA_CGUAAGAUCCAGCAACAUCUGCUGCCA__AAAUGCUUAAGGCAAUUCAAUUUAAUUA
..........................................................(((((.....)))))........(((.....))).............. ( -7.48 =  -7.24 +  -0.24)

alignment

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secondary structure

Postscript

dotplot

Postscript

Window 5

Location 11,154,940 – 11,155,036
Length 96
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 64.26
Shannon entropy 0.61172
G+C content 0.49485
Mean single sequence MFE -30.92
Consensus MFE -11.76
Energy contribution -11.56
Covariance contribution -0.20
Combinations/Pair 1.32
Mean z-score -1.55
Structure conservation index 0.38
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.45
SVM RNA-class probability 0.701121
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 11154940 96 - 22422827
UAAUUAAAUUGAAUUGCCUUAAGCAUUU--UGGCAGCAGAUGUUGCUGAAUCUUACG-UGAUAAGGUGGUCGGCGGGGAAGGUGGUUUUCGGUUGCUUC-------
......((((((((..((((..((...(--..(((((....)))))..)((((((..-...)))))).....))....))))..))..)))))).....------- ( -24.90, z-score =  -0.95, R)
>droPer1.super_17 1720533 106 + 1930428
UAAUUAAAUUGAAUUGCCGCCAGCAUUUGGCAGCAGCAGCUGUUGCCGCUACGAGUACCCGUAUGGCUGCUGUAGGGGAAGGCGGGGAAGAGGAAGCGGCAGCGGC
.............((((.(((((...))))).))))..((((((((((((.(.....(((((....((.(....).))...))))).....)..)))))))))))) ( -43.50, z-score =  -1.96, R)
>dp4.chrXL_group1e 9246176 106 + 12523060
UAAUUAAAUUGAAUUGCCGCCAGCAUUUGGCAGCAGCAGCUGUUGCCGCUACGAGUACCCGUAUGGCUGCUGUAGGGGAAGGCGGGAAAGAGGAAGCGGCAGCGGC
.............((((.(((((...))))).))))..((((((((((((.(.....(((((....((.(....).))...))))).....)..)))))))))))) ( -42.40, z-score =  -1.78, R)
>droSec1.super_15 1844035 77 - 1954846
UAAUUAAAUUGAAUUGCCUUAAGCAUUU--UGGCAGCAGAUGUUGCUGGAUCUUACG-UGGUAAGAAGGUUGGCGGGGGA--------------------------
.............(((((........((--..(((((....)))))..))((((((.-..)))))).....)))))....-------------------------- ( -19.50, z-score =  -1.25, R)
>droSim1.chrX 8617004 90 - 17042790
UAAUUAAAUUGAAUUGCCUUAAGCAUUU--UGGCAGCAGAUGUUGCUGGAUCUUACG-UGGUAAGAAGGUCGGCGGGGGACGGGGGGGUUUUU-------------
..........(((((.((((..((..((--..(((((....)))))..))((((((.-..))))))......)).(....))))).)))))..------------- ( -24.30, z-score =  -1.81, R)
>consensus
UAAUUAAAUUGAAUUGCCUUAAGCAUUU__UGGCAGCAGAUGUUGCUGCAUCUUACG_UGGUAAGGAGGUUGGCGGGGAAGGCGGGGAAGAGG_____________
.............((.((...(((......(((((((....)))))))...(((((....)))))...)))...)).))........................... (-11.76 = -11.56 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:39 2011