| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,028,648 – 11,028,739 |
| Length | 91 |
| Max. P | 0.610419 |
| Location | 11,028,648 – 11,028,739 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 72.70 |
| Shannon entropy | 0.45216 |
| G+C content | 0.36356 |
| Mean single sequence MFE | -22.73 |
| Consensus MFE | -9.69 |
| Energy contribution | -11.12 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.610419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11028648 91 - 23011544 UUCUUUGAAACUAGUUGCUUCAUAUCCAUAUGAAGUCCUCUAAUUGGCUAGUCCUUGUAGAUUAUUUGGAAUUCAAUAAUUAGUUUCAAAG------------------------- ..((((((((((((((((((((((....)))))))(((..(((((.((........)).)))))...)))......)))))))))))))))------------------------- ( -26.60, z-score = -5.03, R) >droYak2.chr2L 7421926 116 - 22324452 UACUUUAAACCUAAUUGCCUCAUAUCUAUAGGACAUCCCCUAACUUGAAGAUCCUUGUAGAUCUUUUGGAAUGCAUUAAUCACUUCCAAUCCUAAAGCCCAUCGCCGGAGUCAAAG ..............(((.(((.......(((((.............(((((((......)))))))(((((((.......)).))))).)))))..((.....))..))).))).. ( -18.70, z-score = -0.79, R) >droSec1.super_3 6429993 116 - 7220098 GUCUUUGAAACUAGUUGCUUCAUAUCCAUAUGACAUCCUCUAAUUCGCUAGUCCUUGUAGAUUAUUUGGAAUCCAAUGAUUAGUUUCAAUGCUGUACAACAUCGCAGGAGUCAAAG (.((((((((((((((...(((((....)))))..(((..(((((..(........)..)))))...))).......)))))))))))...((((........))))))).).... ( -23.90, z-score = -1.23, R) >droSim1.chr2L 10826904 116 - 22036055 UACUUUGAAACUAGUUGCUUCAUAUCCAUAUGACAUCCUCUAUUUCGCUAGUCCUUGUAGAUUAUUUGGAUUCCAAUGAGCAGUUCCAAUCCUGUACAACAUCGCAGGAGACAAAA ...((((.......(((((.((((((((.((((.....(((((.............))))))))).)))))....))))))))......((((((........))))))..)))). ( -21.72, z-score = -0.69, R) >consensus UACUUUGAAACUAGUUGCUUCAUAUCCAUAUGACAUCCUCUAAUUCGCUAGUCCUUGUAGAUUAUUUGGAAUCCAAUAAUCAGUUCCAAUCCUGUACAACAUCGCAGGAGUCAAAG ....(((((((((((((..(((((....))))).....(((((.....(((((......))))).)))))......)))))))))))))........................... ( -9.69 = -11.12 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:25 2011