| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,133,240 – 11,133,331 |
| Length | 91 |
| Max. P | 0.719293 |
| Location | 11,133,240 – 11,133,331 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 62.58 |
| Shannon entropy | 0.64510 |
| G+C content | 0.49465 |
| Mean single sequence MFE | -31.17 |
| Consensus MFE | -13.12 |
| Energy contribution | -11.43 |
| Covariance contribution | -1.68 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11133240 91 + 22422827 AGCGCCCAAAUGCAGGCAACGCUUCUUUCGGCA-ACUGCUUGCCGAACAGGGUAAGC--------------AGUGCAUGCUAGGCCACUUGACAGAUAGUCUACAU--------- .(.(((...((((.(....)(((......))).-((((((((((......)))))))--------------)))))))....))))....(((.....))).....--------- ( -30.50, z-score = -1.14, R) >droSim1.chrX_random 316039 92 + 5698898 AGCGCCCAAAUGCAGGCAACGUUUCUUUCGGCAAACUGCUUGCCGAACAGGGUAAGC--------------AGUGCAUGCUAGGCCACUUGACAGAUAGUCCACAU--------- .(.(((...((((.(....)..............((((((((((......)))))))--------------)))))))....))))....(((.....))).....--------- ( -28.30, z-score = -0.68, R) >droSec1.super_15 1823443 91 + 1954846 AGCGCCCAAAUGCAGGUCACGUUUCUUUCGGCACACUGCUUGCCGAACAGGGUAAGC--------------AGUGCAUGCUAGGCCACUUGACA-AUAGUCUACAU--------- .(((......))).((((.((.......))((((((((((((((......)))))))--------------))))..)))..))))....(((.-...))).....--------- ( -30.70, z-score = -1.80, R) >droYak2.chrX 10762859 92 - 21770863 AGCGCCCAAAUGCAGGCAACGCUUUUUUUUGGCAACUGCUUGCCGAACAGGGUAAGCGGUUG--UGAAAGCAGUGCAUACUAGGCCACUUGAUA--------------------- .(.(((...((((((....)((((((.....(((((((((((((......))))))))))))--)))))))..)))))....))))........--------------------- ( -36.70, z-score = -2.55, R) >droEre2.scaffold_4690 14737245 80 - 18748788 AGCGCCCAAAUGCAGGCAACACUUUUUUCCGCCAACUGCUUGCCGUACAGGGUAAGC--------------AGUGCAUGCUAGGCCGCUUGACA--------------------- ((((((...((((.(((.............))).((((((((((......)))))))--------------)))))))....)).)))).....--------------------- ( -31.42, z-score = -2.02, R) >dp4.chrXL_group1e 9225877 111 - 12523060 AAUGCCCAAAUGCAGGCAUUACUUUUUUCCA---ACUGCUUUCACAGUGGUGUGUAUCUGCGCAUGCAAGCAGUGCAUA-UGCAUAGGUAGUCAUGAAUUCUGAACUGAUCAGAU ((((((........))))))......(((..---(((((((.....((((((((((.((((........))))))))))-).))))))))))...))).(((((.....))))). ( -29.70, z-score = -0.10, R) >droPer1.super_17 1700238 111 - 1930428 AAUGCCCAAAUGCAGGCAUUACUUUUUUUCA---ACUGCUUUCACAGUGGUGUGUGUCUGCGCAUGCAAGCAGUGCAUA-UGCAUAGGUAGUCAUGAAUUCUGAACUGAUCAGAU ((((((........)))))).......((((---(((((((........((((((((((((........)))).)))))-)))..)))))))..)))).(((((.....))))). ( -30.90, z-score = -0.16, R) >consensus AGCGCCCAAAUGCAGGCAACGCUUUUUUCCGCA_ACUGCUUGCCGAACAGGGUAAGC______________AGUGCAUGCUAGGCCACUUGACA_AUAGUCUACAU_________ .(((((........)))..((((..............(((((((......)))))))..............))))........)).............................. (-13.12 = -11.43 + -1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:34 2011