| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,127,551 – 11,127,623 |
| Length | 72 |
| Max. P | 0.510545 |
| Location | 11,127,551 – 11,127,623 |
|---|---|
| Length | 72 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 57.90 |
| Shannon entropy | 0.81413 |
| G+C content | 0.49272 |
| Mean single sequence MFE | -21.35 |
| Consensus MFE | -5.05 |
| Energy contribution | -6.67 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510545 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11127551 72 - 22422827 GUCGAAAAGU---GCGAUAACAAGGC-UAAAGAAUCUAGCCGAAGGGGAAAAAUCCCCUAAACUGGCAAUGCCCUC ((((......---.)))).....(((-((.......)))))..((((((....)))))).....(((...)))... ( -19.80, z-score = -2.25, R) >droEre2.scaffold_4690 14731769 72 + 18748788 GCCGGAAAGC---GCGAUAGCAAGGC-UGGAAAUUCUAGCCGAAGGGGAAAACUCCCCUAAACUGGCAAUGCCCUC (((((...((---......))..(((-(((.....))))))..((((((....))))))...)))))......... ( -30.70, z-score = -3.50, R) >droSec1.super_15 1817821 74 - 1954846 GUCGGAAAGU-CGGCGAUAACAAGGC-UGAAGAAGCUAGCCGAAGGGGAAAAGUCCCCUGAACUGGCAAUACCCUC (((((....(-(((((....)..(((-(.....)))).)))))((((((....))))))...)))))......... ( -26.50, z-score = -2.58, R) >droSim1.chrX_random 3119304 74 - 5698898 CUCGGAAAGU-CGGCGAUAACAAGGC-UGAAGAAGCUAGCCGAAGGGGAAAAGUCCCCUGAACUGGCAAUGCCCUC ..........-.((((.......(((-(.....)))).((((.((((((....))))))....))))..))))... ( -24.60, z-score = -1.53, R) >droWil1.scaffold_180777 160013 66 + 4753960 AUCGCUUACU---GUGGGACUGAGGU-AGAGGAAAUGAAAGUCGAAAGAAAGUU------AAUUGUCAACUCUUUC .((((.....---))))((..(((..-.((.((..(((...((....))...))------).)).))..)))..)) ( -10.50, z-score = 0.61, R) >droGri2.scaffold_15203 3161638 75 - 11997470 -CAGGGAAGUGCCGUUGUGUUACAUUAUUAUGCAGCAAAACUGUUUUUAAAGACAUGCCACAACCGUGUUGCCACC -...((.((..(.((((((.((..((.(((.((((.....))))...))).))..)).)))))).)..)).))... ( -16.00, z-score = 0.19, R) >consensus GUCGGAAAGU___GCGAUAACAAGGC_UGAAGAAGCUAGCCGAAGGGGAAAAAUCCCCUAAACUGGCAAUGCCCUC ......................................((((.((((((....))))))....))))......... ( -5.05 = -6.67 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:33 2011