| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,125,623 – 11,125,759 |
| Length | 136 |
| Max. P | 0.986251 |
| Location | 11,125,623 – 11,125,759 |
|---|---|
| Length | 136 |
| Sequences | 6 |
| Columns | 145 |
| Reading direction | forward |
| Mean pairwise identity | 76.44 |
| Shannon entropy | 0.45268 |
| G+C content | 0.49556 |
| Mean single sequence MFE | -44.72 |
| Consensus MFE | -26.22 |
| Energy contribution | -27.67 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.23 |
| SVM RNA-class probability | 0.986251 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11125623 136 + 22422827 --------AGCCUCUGGAUGUCCGUCCGUGU-ACUCGACUCGAGUCCUACGCAUUUGCCUGGCCAUUCAAUUGGCAAGAUUAAUUAUCGAUAACGAUAGCCGGCGAUGUGCGGCAAGGAUGCGAUUCAAUCACAACUAUGGCCAC --------.(((...((((....))))(((.-....((.(((.(((((.((((((((((..((((......))))........((((((....))))))..))))).)))))...))))).))).))...)))......)))... ( -45.90, z-score = -2.16, R) >droSec1.super_15 1815957 136 + 1954846 --------AGCCUCUAGACGUCCGUCCGUGU-ACUCGAGUCGAGUCCUACGCAUUUGCCUGGCCAUUCAAUUGGCAAGAUUAAUUAUCGAUAACGAUAGCCGGCGAUGUGCGGCAAGGAUGCGAUUCAAUCACAACUAUGGCCAC --------.(((....(((....))).(((.-....((((((.(((((.((((((((((..((((......))))........((((((....))))))..))))).)))))...))))).))))))...)))......)))... ( -47.20, z-score = -2.70, R) >droSim1.chrX_random 3116491 136 + 5698898 --------AGCCUCUGGAUGUCCGUCCGUGU-ACUCGAGUCGAGUCCUACGCAUUUGCCUGGCCAUUCAAUUGGCAAGAUUAAUUAUCGAUAACGAUAGCCGGCGAUGUGCGGCAAGGAUGCGAUUCAAUCACAACUAUGGGCAC --------.((((..((((....))))(((.-....((((((.(((((.((((((((((..((((......))))........((((((....))))))..))))).)))))...))))).))))))...)))......)))).. ( -51.20, z-score = -3.12, R) >droAna3.scaffold_13248 2681318 105 + 4840945 ------------------------UUCGUGC--UCGCACUCGAACUUUACGCAUUUGGGAGGCAAACAGAAUGCCAGGAUUAAUUAUCGAUAACGAUAGC---------GAGGCAGAGCUUCGAUA-AACCACAAAUAUGG---- ------------------------.(((.((--((((.((((........((((((.(........).)))))).........((((((....)))))))---------))))).))))..)))..-..(((......)))---- ( -26.70, z-score = -1.89, R) >droYak2.chrX 10755295 144 - 21770863 AGCCUCUAGAUGUCUAGAUGUCCGUCCGUGC-ACUUGAGUCGAGUCCUACGCAUUUGCCUGGCCAUUCAAUUGGCAAGAUUAAUUAUCGAUAACGAUAGUCGGCGAUGAGCGGCAGGGUUGCGAUUCAAUCACAACUAUGGCCAC .((((((((....))))).........(((.-..(((((((((..(((.(((..(((((..((((......)))).......(((((((....))))))).)))))...)))..)))..).)))))))).)))......)))... ( -49.30, z-score = -2.32, R) >droEre2.scaffold_4690 14729874 141 - 18748788 ----CUAGAGUCUGUGUACUCGAGUCGAUUCGAGGCGAGUGGAGUGCUACGCAUUUGCCUGGCCAUUCAAUUGGCAAGAUUAAUUAUCGAUAACGAUAGCCGGCGACGAGCGGCAGGCAUGCGAUUCAAUCACAACUAUGGCCAC ----...(((((.((((((((.(.(((........))).).)))))).))(((..((((((((((......)))).........(((((....)))))((((....)).))..)))))))))))))).................. ( -48.00, z-score = -1.75, R) >consensus ________AGCCUCUGGAUGUCCGUCCGUGC_ACUCGAGUCGAGUCCUACGCAUUUGCCUGGCCAUUCAAUUGGCAAGAUUAAUUAUCGAUAACGAUAGCCGGCGAUGUGCGGCAAGGAUGCGAUUCAAUCACAACUAUGGCCAC ....................................((((((.(((((.(((..(((((..((((......))))........((((((....))))))..)))))...)))...))))).)))))).................. (-26.22 = -27.67 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:32 2011