| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,108,859 – 11,108,958 |
| Length | 99 |
| Max. P | 0.859826 |
| Location | 11,108,859 – 11,108,958 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 63.05 |
| Shannon entropy | 0.62857 |
| G+C content | 0.37279 |
| Mean single sequence MFE | -19.33 |
| Consensus MFE | -7.72 |
| Energy contribution | -8.24 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859826 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11108859 99 + 22422827 UGACUUACCAACUCGAUUUAGGUUACAAUUAU----CAUUACCGAG--CCCUUCUAUUAGUUAUUAAGCUCAUACU----UGGCUGAACUUUUCCAGUCAAGGUCAUGA (((((((...........)))))))......(----(((.((((((--(..................))))....(----((((((........)))))))))).)))) ( -19.87, z-score = -1.54, R) >droSim1.chrX 8594220 93 + 17042790 UGACUUAACAACUC--UCUUGUUUUGGGUUUA----GGUUACA------UUUAUCAUUAGUUAUUAAGCUCAUACU----UGGCUGUACUUUUCCAGCCAAGGUCACGA ((((..(((((...--..))))).((((((((----(...((.------..........))..)))))))))..((----((((((........))))))))))))... ( -23.70, z-score = -2.92, R) >droSec1.super_15 1800157 93 + 1954846 UGACUUAAAAACUC--UCUUUUUUUUGGUUUA----GGUUACA------UUUAUCAUUAGUUAUUAAGCUCAAACU----UGGCUGUACUUUUCCAGUCAAGGUCACGA ((((..........--.......(((((((((----(...((.------..........))..)))))).))))((----((((((........))))))))))))... ( -18.50, z-score = -1.92, R) >droYak2.chrX 10739140 97 - 21770863 UCACUUAUCCUUAUC-ACA----UAGAAU-------AAUCGGAACGGAUCCUAGUAUUAGUCAUUCAACCUAUACUUACGUGGCUGAACUUUUACCGCCAAGGUCAUGG ...(....((((...-...----..((..-------..))((..(((.....(((.((((((((...............)))))))))))....)))))))))....). ( -13.86, z-score = 0.76, R) >droEre2.scaffold_4690 14713039 100 - 18748788 UCACUUACCACCAUC-CCUAGAUUAGAAUCUAAUCUAAUCAUCACGGACCCUAGUACUAGUCAUUAAACUUAUA----AAUGGCUGAACUUU----GCCAAGGUCACGG ...............-....(((((((......)))))))....(((((((((....)))..............----..((((........----)))).)))).)). ( -20.70, z-score = -2.45, R) >consensus UGACUUAACAACUC__UCUAGUUUAGAAUUUA____AAUUACA__G___CCUAGUAUUAGUUAUUAAGCUCAUACU____UGGCUGAACUUUUCCAGCCAAGGUCACGA ((((((.....................................................((......))...........((((((........))))))))))))... ( -7.72 = -8.24 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:31 2011