| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,104,495 – 11,104,598 |
| Length | 103 |
| Max. P | 0.829073 |
| Location | 11,104,495 – 11,104,598 |
|---|---|
| Length | 103 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 65.13 |
| Shannon entropy | 0.72136 |
| G+C content | 0.38401 |
| Mean single sequence MFE | -18.27 |
| Consensus MFE | -6.92 |
| Energy contribution | -7.23 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11104495 103 - 22422827 GCCGAAGUGCCAGCUUUUUUCGG--------UCACCCCCUCA-UCACUUUCCAUGUCGCC--AAAGUUUGCGUGUUUAUGUUAUUAAAUAA-UUUCAAUAAUAUUCACACAUACA (((((((.(....)...))))))--------)..........-.................--...((.((.(((...((((((((.((...-.)).)))))))).))).)).)). ( -16.30, z-score = -1.85, R) >droSim1.chrX 8588807 104 - 17042790 GCCGAAGUGCCAGCUUUUUUCGG--------CCACCCCACCAUUCUCUUUCCUUGUCGCC--AAAGUUUGCGUGUUUAUGUUAUUAAAUAA-UUUCAAUAAUAUUCACACAUACA (((((((.(....)...))))))--------)............................--...((.((.(((...((((((((.((...-.)).)))))))).))).)).)). ( -18.40, z-score = -2.60, R) >droSec1.super_15 1795746 104 - 1954846 GCCGAAGUGCCAGCUUUUUUCGG--------CCACCCCACCCUUCCCUUUCCUUGUCGCC--AAAGUUUGCGUGUUUAUGUUAUUAAAUAA-UUUCAAUAAUAUUCACACAUACA (((((((.(....)...))))))--------)............................--...((.((.(((...((((((((.((...-.)).)))))))).))).)).)). ( -18.40, z-score = -2.85, R) >droEre2.scaffold_4690 14708638 112 + 18748788 GCCGAAGUGACGGCUUUUUUCGGGCCCCAACCUGCCUGCCCACCCCCUUUACUUGUCGCC--AAAGUUUGCGUGUUUAUGUUAUUAAAUAA-UUUCAAUAAUAUUCACACAUACA (.((((((((.((.......(((((........))))).......)).)))))..))).)--...((.((.(((...((((((((.((...-.)).)))))))).))).)).)). ( -23.44, z-score = -1.71, R) >droAna3.scaffold_13248 2653043 103 - 4840945 -UCGGAGGAAUAGCCUCCAAGGG--------UCGCCCUGACUCGCUUUUUAUUUGUCGCC--AAAGUUUGCGUGUUUAUGUUAUUAAAUAA-UUUCAAUAAUAUUCACACAUAUA -..(((((.....)))))..(((--------((.....)))))((......((((....)--)))....))((((..((((((((.((...-.)).))))))))..))))..... ( -25.70, z-score = -2.71, R) >dp4.chrXL_group1e 9191399 90 + 12523060 --------------CUCGCCGUG--------CCCCCCUCA-UCGCAUUUUAUUUGUCGCC-AAAAGUUUGCGUGUUUAUGGUAUUAAAUAA-UUUCAAUAAUAUUCACACAUACA --------------......(((--------((.....((-.((((..((.((((....)-)))))..)))))).....))))).......-....................... ( -11.10, z-score = -0.26, R) >droPer1.super_17 1661707 91 + 1930428 --------------CUCGCCGUG--------CCCCCCUCA-UCGCAUUUUAUUUGUCGCC-AAAAGUUUGCGUGUUUAUGGUAUUAAAUAACUUUCAAUAAUAUUCACACAUACA --------------......(((--------((.....((-.((((..((.((((....)-)))))..)))))).....)))))............................... ( -11.10, z-score = -0.22, R) >droWil1.scaffold_180777 4615924 98 - 4753960 -CCCAAAUAUUUAGUUGUUCU----------UUUUGCUGUUGUUUUUGUUUAUUGUCACC-GAAAGUUUGCGUGUUUAUGUUAUUAAAUAAUUUUGUGUAAUAUUCACAC----- -..((((.((.((((......----------....))))..)).))))......((...(-....)...))((((..(((((((((((....)))).)))))))..))))----- ( -10.00, z-score = 0.48, R) >droVir3.scaffold_12970 747892 97 + 11907090 -CUUG---AGCGGCAUUUGG--A--------GCCCAUGGGUUUU-GUGUUCUUUGACAUU-CAAACUUUACGUG-CUGUGUUAGUGAAUCA-UUUUAUUAAUAUUCGCACAUAUA -.(..---((..((((..((--(--------(((....))))))-))))..))..)....-..........(((-(.(((((((((((...-.)))))))))))..))))..... ( -24.50, z-score = -1.81, R) >droMoj3.scaffold_6473 10195369 105 - 16943266 CCUUGAGCAGCAGCAUUUGGCUG--------GCCCAUGGGCUUUGGGGCUCUGUGACAUUCCAAACCUUACGUG-UUGUGUUAUUGAAACA-UAUUAUUAAUAUUCACACAUUCA ....((((..((((.....))))--------.((((.......))))))))....................(((-(.((((((.(((....-..))).))))))..))))..... ( -23.80, z-score = 0.57, R) >consensus _CCGAAGUACCAGCUUUUUUCGG________CCCCCCUCACUUUCAUUUUCUUUGUCGCC__AAAGUUUGCGUGUUUAUGUUAUUAAAUAA_UUUCAAUAAUAUUCACACAUACA .......................................................................((((..((((((((.((.....)).))))))))..))))..... ( -6.92 = -7.23 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:29 2011