| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,099,515 – 11,099,617 |
| Length | 102 |
| Max. P | 0.654896 |
| Location | 11,099,515 – 11,099,617 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.54 |
| Shannon entropy | 0.35464 |
| G+C content | 0.54776 |
| Mean single sequence MFE | -39.56 |
| Consensus MFE | -23.48 |
| Energy contribution | -24.24 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11099515 102 + 22422827 ACAAACAGUUGGGAACCG-----GGGUCAGGGGUCGUUUCGGUUUCGUGAUUUC-GCCUGCAGGGUAACAUUUAAUCGAACCCUGGAGGCAGGACAUU--CCCGCCAACU---------- .......(.(((((((((-----..(((((((..((...))..))).))))..)-((((.((((((.............)))))).)))).))...))--)))).)....---------- ( -38.02, z-score = -1.90, R) >droSec1.super_15 1790317 102 + 1954846 ACAAACAGUUGGGAAGCG-----GGGUCAGGGGUCGUUGCGGUACCGUGAUUUC-GCCUGCAGGGUAACAUUUAAUCGAACCCUGGAGGCAGCACAUU--CCCGCCUACU---------- ......((.(((((((((-----..((((((..(((...)))..)).))))..)-((((.((((((.............)))))).)))).))...))--)))).))...---------- ( -40.02, z-score = -2.15, R) >droYak2.chrX 10729816 108 - 21770863 ACAAACAGUUGGGCACUGUUGUGGGGUCAGGGGUCAUUUUGGGUGCGUGAUUCCUGCCUGCAGGGUAACAUUUAAUCGAACCCUGGAGGCAGGACAUU--CCCGGCAACU---------- .......((((((....((..((.(.((((((....)))))).).))..))((((((((.((((((.............)))))).))))))))....--))))))....---------- ( -42.42, z-score = -1.89, R) >droEre2.scaffold_4690 14704052 102 - 18748788 ACAAACAGUUGGGAACCG-----GGGUCAGGGGUCGUUUCGGUUCCGUGAUUCC-GCCUGCAGGGUAGCAUUUAAUCGAACCCUGGAGGCAGCACAUU--CCCGCCAACU---------- .......(.((((((..(-----((((((((..(((...)))..)).)))))))-((((.((((((.............)))))).))))......))--)))).)....---------- ( -42.42, z-score = -2.66, R) >droAna3.scaffold_13248 2648254 114 + 4840945 AUAAACAGGUAAAGACCU----GAGGUCAGGGGUCUUUUCGACUGCCCGCAUAU--CCUGCAGGGUAAUCCUUAAUCGAACCCUGGAGGCAGGACAUCGCCCCCGUAAAUGCUGCCCACU .....(((((....))))----)...(((((((((.....)))((((((((...--..))).))))).............)))))).(((((.(...((....))....).))))).... ( -34.90, z-score = -0.46, R) >consensus ACAAACAGUUGGGAACCG_____GGGUCAGGGGUCGUUUCGGUUCCGUGAUUCC_GCCUGCAGGGUAACAUUUAAUCGAACCCUGGAGGCAGGACAUU__CCCGCCAACU__________ ......((((((..(((.......)))..(((...((..((....))..))....((((.((((((.............)))))).))))..........))).)))))).......... (-23.48 = -24.24 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:28 2011