Locus 1409

Sequence ID	dm3.chr2L
Location	11,027,554 – 11,027,645
Length	91
Max. P	0.998028

overview

Window 3

Location	11,027,554 – 11,027,645
Length	91
Sequences	4
Columns	91
Reading direction	reverse
Mean pairwise identity	93.74
Shannon entropy	0.10429
G+C content	0.39023
Mean single sequence MFE	-19.86
Consensus MFE	-19.70
Energy contribution	-19.70
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-3.26
Structure conservation index	0.99
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	3.24
SVM RNA-class probability	0.998028
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 11027554 91 - 23011544
CCAGGCGAUAGAAAAGACCAGCCUCGUUUCUGUUACCUUUUUUUUAUUUUCUUUCUUUCAGACUUUUCAGUCUUUUUUGUCGUCGUUGUCG
...(((((((((((((((..........((((..........................)))).......)))))))))))))))....... ( -19.70, z-score =  -3.29, R)
>droEre2.scaffold_4929 12222643 83 + 26641161
CCAGGCGAUAGAAAAGACCAGCCUCGUUUCUGUUACCUUUUUU--------UUUCUUUCAGACUUUUCAGUCUUUUUUGUCGUCGUUGUCG
...(((((((((((((((..........((((...........--------.......)))).......)))))))))))))))....... ( -20.10, z-score =  -3.31, R)
>droYak2.chr2L 7420798 90 - 22324452
CCAGGCGAUAGAAAAGACCAGCCUCGUUUCUGUUACCUUUUUAUU-UUUUUUUGCUUUCAGACUUUUCAGUCUUUUUUGUCGUCGUUGUCG
...((((((((((((((((((........))).............-....((((....)))).......)))))))))))))))....... ( -19.90, z-score =  -2.96, R)
>droSim1.chr2L 10825717 90 - 22036055
CCAGGCGAUAGAAAAGACCAGCCUCGUUUCUGUUACCUUUUUUUU-UUUAUUUUCUUUCAGACUUUUCAGUCUUUUUUGUCGUCGUUGUCG
...(((((((((((((((..........((((.............-............)))).......)))))))))))))))....... ( -19.74, z-score =  -3.48, R)
>consensus
CCAGGCGAUAGAAAAGACCAGCCUCGUUUCUGUUACCUUUUUUUU_UUUUUUUUCUUUCAGACUUUUCAGUCUUUUUUGUCGUCGUUGUCG
...(((((((((((((((..........((((..........................)))).......)))))))))))))))....... (-19.70 = -19.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:24 2011