| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,054,004 – 11,054,096 |
| Length | 92 |
| Max. P | 0.979962 |
| Location | 11,054,004 – 11,054,096 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 79.91 |
| Shannon entropy | 0.36986 |
| G+C content | 0.52169 |
| Mean single sequence MFE | -33.16 |
| Consensus MFE | -23.92 |
| Energy contribution | -24.03 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.04 |
| SVM RNA-class probability | 0.979962 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11054004 92 + 22422827 ----------UAGCCACCACCAAAUGGAGAACGUUAAAGCGUUCACUUACCACUGCCUGUACAGUGGCACGCAGGUGGUCUUUUGUCCCAAAGUGGGUCAAC- ----------..((((((.((....)).((((((....)))))).....((((((......))))))......))))))...(((.(((.....))).))).- ( -33.70, z-score = -2.76, R) >droSim1.chrX_random 3112787 92 + 5698898 ----------UAGCCACCACCAAAUGGAGAACGUUAAAGCGUUCACUUACCACUGCCUGUACAGUGGGACGCAGGUGGUCUAUUGCCCCAAAGUGGGUCAAC- ----------((((((((.((....)).((((((....)))))).....((((((......))))))......))))).)))(((.(((.....))).))).- ( -34.30, z-score = -2.65, R) >droSec1.super_15 1757934 101 + 1954846 -CCAACCAAAUAGCCACCACCAAAUGGAGAACGUUAAAGCGUUCACUUACCACUGCCUGUACAGUGGGACGCAGGUGGUCUAUUGCCCCAAAGUGGGUCAAC- -.......((((((((((.((....)).((((((....)))))).....((((((......))))))......))))).)))))((((......))))....- ( -35.30, z-score = -2.66, R) >droYak2.chrX 10697839 96 - 21770863 -CCAACCAAAUAGCCACCACCAAAUGGAGAACGUUCAAGCGUUCACCUACCACUGC----ACAGUGGGACGCAGGUGG-CUUUUCCUUCAAAGUGGGUCAAC- -....(((...(((((((.......((.((((((....)))))).))..(((((..----..)))))......)))))-))............)))......- ( -31.96, z-score = -2.54, R) >droEre2.scaffold_4690 14671966 96 - 18748788 -CCAACCAAAUAGCCACCACCAAAUGGAGAACGUUAAAGCGUUCACUUACCACUGC----ACAGUGGGACGCAGGUGG-CUUUUCCCCCGAAGUGGGUCAAC- -..........(((((((.((....)).((((((....)))))).....(((((..----..)))))......)))))-)).....(((.....))).....- ( -31.60, z-score = -2.14, R) >droAna3.scaffold_13248 2598454 98 + 4840945 CCAACCCACUUAUACACCACCGAAGGGGUAACGCUGAAAUGUUCACUUACUCUGGC----ACAGUGGGGCG-AGGUGGACUCUUUCUGGGAAGUGGGUCAGUU ...((((((((...((((.((....))((..(((((...(((.((.......))))----))))))..)).-.))))..(((.....)))))))))))..... ( -32.10, z-score = -0.64, R) >consensus _CCAACCAAAUAGCCACCACCAAAUGGAGAACGUUAAAGCGUUCACUUACCACUGC____ACAGUGGGACGCAGGUGGUCUUUUGCCCCAAAGUGGGUCAAC_ ................(((((....((.((((((....)))))).))..((((((......))))))......)))))........(((.....)))...... (-23.92 = -24.03 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:20 2011