| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,042,229 – 11,042,349 |
| Length | 120 |
| Max. P | 0.572475 |
| Location | 11,042,229 – 11,042,349 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.00 |
| Shannon entropy | 0.35158 |
| G+C content | 0.62000 |
| Mean single sequence MFE | -45.15 |
| Consensus MFE | -31.04 |
| Energy contribution | -31.40 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572475 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11042229 120 - 22422827 UCCCGACCCAGCGGCUUUUGCUGUCUGUCCACCCGGCCACCGCCCACCCGGCUUCCGGCCACCAAGUCCAGCCGGUUAACAAGCCCGAUUGCCGGCUAGAGUUGUACAAAACAAGUGGCG ........(((((((....)))).))).((((..((((...(((.....)))....))))..(((.((.(((((((...(......)...))))))).)).)))..........)))).. ( -40.50, z-score = -1.36, R) >droSim1.chrU 15591070 120 - 15797150 UCCCGGCCCGGCGGUUUCUGCUGCCUGUCCUCACGGGCACCGCCCACCCGGCUUCUGGCCACCAAGUCCAGCCGGUCAACAAGCCCAGUUGCCGGCUAGAGUUGCAAAAAACAAGUUGCG ....((((.((((((....))))))(((((....)))))..(((.....)))....))))...((.((.((((((.((((.......)))))))))).)).))((((........)))). ( -46.80, z-score = -1.61, R) >droSec1.super_15 1745825 120 - 1954846 UCCCGGCCCGGCGGUUUCUGUUGCCUGUCCGGACGGGCACCGCCCACCCGGCUUCUGGCCACCAAGUCCAGCCGGUCAACAAUCCCAGUUGCCGGUUAGAGUUGCAGAAAACAAGUGGCG ..((((...((((((.......((((((....))))))))))))...))))......((((((((.((.((((((.((((.......)))))))))).)).)))..........))))). ( -50.21, z-score = -1.92, R) >droYak2.chrX 10686186 120 + 21770863 UCCCGGGCCUGCGGCUUCUGCUGCUUGUCCAACUGGGCAUCGCCCAUUCGGCUUCCGGCCACUAUAUCCAGCCGGCCAAUAAGGCAAAAUGCCGGCUGCUGUUAAAGAAACCAACUUGCG ....((((..(((((....))))).(((((....)))))..)))).((((((.....)))........((((((((..............))))))))........)))........... ( -43.04, z-score = -1.17, R) >droEre2.scaffold_4690 14660245 120 + 18748788 UCCCGGGCCAGCGGCAUUUGCUGCUUGUUCAACUGGGCAUCGCCCACCCGGUUUCCGGCCACCAAUACCAGUCGGCCAACAAGCCAAAAUGCCGGUUGGGGUUGUAGAACACAGCUUGCG .......((((((((((((...(((((((.(((((((.........)))))))...((((((........)).)))))))))))..))))))).)))))((((((.....)))))).... ( -45.20, z-score = -0.77, R) >consensus UCCCGGCCCAGCGGCUUCUGCUGCCUGUCCAACCGGGCACCGCCCACCCGGCUUCCGGCCACCAAGUCCAGCCGGUCAACAAGCCCAAUUGCCGGCUAGAGUUGCAGAAAACAAGUUGCG ....((.(.((((((....)))))).).))....((((...))))....(((.....)))..(((.((.((((((.((((.......)))))))))).)).)))................ (-31.04 = -31.40 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:19 2011