Locus 14084

Sequence ID dm3.chrX
Location 11,039,759 – 11,039,879
Length 120
Max. P 0.610571
window19369

overview

Window 9

Location 11,039,759 – 11,039,879
Length 120
Sequences 15
Columns 120
Reading direction reverse
Mean pairwise identity 84.44
Shannon entropy 0.35040
G+C content 0.51500
Mean single sequence MFE -40.22
Consensus MFE -19.24
Energy contribution -19.08
Covariance contribution -0.15
Combinations/Pair 1.33
Mean z-score -2.22
Structure conservation index 0.48
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.24
SVM RNA-class probability 0.610571
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 11039759 120 - 22422827
AAAUCGAACUACAACUUCGAGAAACCAUUCCUUUGGCUGGCGCGCAAGCUGGUUGGUGAUCCCAACCUGGAGUUUGUCGCCAUGCCAGCCCUGCUGCCGCCCGAGGUUAAGAUGGAUAAG
...(((((.......)))))....(((((((((.(((.((((.(((.((((((((((((((((.....)).)...))))))).))))))..)))))))))).))))....)))))..... ( -47.20, z-score =  -3.71, R)
>anoGam1.chr2L 48563539 120 - 48795086
AAAUCGAACUACAACUUCGAGAAACCGUUCCUGUGGCUGGCUCGCAAGCUUGUCGGUGAUCCUAACCUGGAGUUCGUUGCCAUGCCUGCCUUGCUUCCACCGGAAGUGAAAAUGGACAAG
...(((((.......)))))....(((((.....(((.(((..((((((((...(((.......)))..))))...))))...))).)))(..(((((...)))))..).)))))..... ( -32.90, z-score =  -0.64, R)
>droGri2.scaffold_14853 8498178 120 + 10151454
AAAUCGAAUUACAACUUUGAGAAACCCUUCCUUUGGCUCGCCCGCAAACUGGUCGGCGAUCCAAACCUGGAGUUUGUGGCAAUGCCGGCACUGCUGCCACCCGAGGUCAAAAUGGACAGA
...(((((.......)))))......(((((.((((.(((((.((......)).))))).))))((((((.((..(..(((.((....)).)))..).)))).))))......))).)). ( -33.40, z-score =  -0.05, R)
>droMoj3.scaffold_6473 238956 120 - 16943266
AAGUCGAAUUACAACUUUGAGAAACCAUUCCUUUGGCUGGCCCGCAAGCUGGUCGGUGAUCCAAAUCUGGAGUUCGUAGCAAUGCCGGCGCUGCUGCCACCGGAGGUCAAAAUGGAUAAA
...(((((.......)))))....((((((((((((.((((..(((.(((((((((...((((....))))..))).......))))))..))).)))))))))))....)))))..... ( -39.11, z-score =  -1.12, R)
>droVir3.scaffold_12928 2939348 120 + 7717345
AAAUCGAAUUACAACUUUGAGAAACCAUUCCUUUGGCUGGCCCGCAAACUGGUCGGCGAUCCAAAUCUGGAGUUCGUGGCAAUGCCGGCACUGCUGCCACCGGAGGUCAAAAUGGAUAAA
...(((((.......)))))....((((((((((((.((((..(((.....(((((((.((((....))))((.....))..)))))))..))).)))))))))))....)))))..... ( -38.20, z-score =  -1.31, R)
>droWil1.scaffold_181150 3326669 120 + 4952429
AAAUCGAAUUAUAACUUCGAAAAACCAUUCCUUUGGCUGGCCCGCAAGCUGGUCGGUGAUCCCAACUUAGAAUUUGUGGCUAUGCCAGCUCUUCUGCCGCCAGAGGUUAAAAUGGACAAA
...(((((.......)))))....(((((((((((((.(((.....(((((((..(((..(.(((........))).)..)))))))))).....)))))))))))....)))))..... ( -38.20, z-score =  -2.67, R)
>droPer1.super_17 87103 120 - 1930428
AAGUCAAACUACAAUUUCGAAAAACCAUUCCUCUGGCUGGCACGCAAAUUGGUUGGUGAUCCCAACCUAGAGUUCGUUGCCAUGCCGGCACUGCUGCCGCCAGAGGUGAAAAUGGACAAG
........................(((((((((((((.((((.(((....((((((.....))))))..........((((.....)))).)))))))))))))))....)))))..... ( -43.90, z-score =  -3.51, R)
>dp4.chrXL_group1e 3152187 120 - 12523060
AAGUCAAACUACAAUUUCGAAAAACCAUUCCUCUGGCUGGCACGCAAAUUGGUUGGUGAUCCCAACCUAGAGUUCGUUGCCAUGCCGGCACUGCUGCCGCCAGAGGUGAAAAUGGACAAG
........................(((((((((((((.((((.(((....((((((.....))))))..........((((.....)))).)))))))))))))))....)))))..... ( -43.90, z-score =  -3.51, R)
>droAna3.scaffold_13417 6099247 120 + 6960332
AAAUCGAAUUACAAUUUCGAGAAACCAUUCCUUUGGCUGGCGCGCAAGCUGGUCGGUGAUCCCAACCUGGAAUUCGUUGCCAUGCCAGCUCUACUGCCGCCGGAGGUUAAGAUGGACAAG
...(((((.......)))))....(((((((((((((.((((....(((((((.((..((.((.....)).....))..))..)))))))....))))))))))))....)))))..... ( -43.40, z-score =  -2.72, R)
>droEre2.scaffold_4690 14657853 120 + 18748788
AAAUCGAACUACAACUUCGAGAAACCAUUCCUCUGGCUGGCGCGCAAGCUGGUUGGUGAUCCCAACCUGGAGUUCGUCGCCAUGCCAGCCCUGCUGCCGCCCGAGGUCAAGAUGGACAAG
...(((((.......)))))....(((((((((.(((.((((.(((.((((((((((((((((.....)).)...))))))).))))))..)))))))))).))))....)))))..... ( -49.00, z-score =  -3.66, R)
>droYak2.chrX 10683596 120 + 21770863
AAAUCGAACUACAACUUCGAGAAACCAUUCCUGUGGCUGGCACGCAAGCUGGUUGGUGAUCCCAACCUGGAGUUCGUCGCCAUGCCAGCCCUGCUGCCGCCCGAGGUUAAGAUGGACAAG
...(((((.......)))))....((((((((..(((.((((.(((.((((((((((((((((.....)).)...))))))).))))))..))))))))))..)))....)))))..... ( -45.70, z-score =  -3.08, R)
>droSec1.super_15 1743365 120 - 1954846
AAAUCGAACUACAACUUCGAGAAACCAUUCCUCUGGCUGGCGCGCAAGCUGGUUGGUGAUCCCAACCUGGAGUUUGUCGCCAUGCCAGCCCUGCUGCCGCCCGAGGUCAAGAUGGAUAAG
...(((((.......)))))....(((((((((.(((.((((.(((.((((((((((((((((.....)).)...))))))).))))))..)))))))))).))))....)))))..... ( -49.00, z-score =  -3.95, R)
>droSim1.chrX_random 3097014 120 - 5698898
AAAUCGAACUACAACUUCGAGAAACCAUUCCUCUGGCUGGCGCGCAAGCUGGUUGGUGAUCCCAACCUGGAGUUUGUCGCCAUGCCAGCCCUGCUGCCGCCCGAGGUCAAGAUGGAUAAG
...(((((.......)))))....(((((((((.(((.((((.(((.((((((((((((((((.....)).)...))))))).))))))..)))))))))).))))....)))))..... ( -49.00, z-score =  -3.95, R)
>apiMel3.Group11 159803 120 - 12576330
AAAAGCAACUAUAAUUUUGAAAAACCUUUCUUAUGGUUGGCACGUAAACUGAUCGGUGAUCCAAAUCUCGAAUUUGUCGCAAUGCCAGCUCUUCUUCCACCAGAAGUUACAAUGGAUCCA
...(((((((((((....((((....))))))))))))((((((.........))((((..(((((.....)))))))))..)))).)))(((((......))))).............. ( -20.40, z-score =   0.41, R)
>triCas2.ChLG9 1475710 120 + 15222296
AAAUCGAAUUACAACUUCGAAAAGCCGUUCCUGUGGUUGGCGCGCAAACUAAUCGGUGAUCCUAAUCUAGAGUUUGUGGCGAUGCCCGCACUGGUGCCCCCAGAAGUCACAAUGGACCCC
...(((((.......)))))....(((((..(((((.(.((.((((((((....(((.......)))...)))))))))).)...)))))((((.....)))).......)))))..... ( -30.00, z-score =   0.14, R)
>consensus
AAAUCGAACUACAACUUCGAGAAACCAUUCCUUUGGCUGGCGCGCAAGCUGGUCGGUGAUCCCAACCUGGAGUUCGUCGCCAUGCCAGCCCUGCUGCCGCCCGAGGUCAAAAUGGACAAG
...(((((.......)))))....(((((((((.((.((((.......((((((((...((........))..))).......))))).......)))))).))))....)))))..... (-19.24 = -19.08 +  -0.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:18 2011