| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,018,572 – 11,018,666 |
| Length | 94 |
| Max. P | 0.853589 |
| Location | 11,018,572 – 11,018,666 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 77.78 |
| Shannon entropy | 0.40988 |
| G+C content | 0.52741 |
| Mean single sequence MFE | -31.17 |
| Consensus MFE | -18.52 |
| Energy contribution | -18.53 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.853589 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11018572 94 - 22422827 CGGUCGCUCCUGCUGCUUCUGUGUGUGCUAUGUGUGCGUGUGCGAACGAACCAAAUAUAUACACACACGAGCGCUGGUAGGACAGUGAAAUCGA (((((((((((((((((((.(((((((.(((((((.(((......)))......))))))))))))))))).)).)))))))..))))..))). ( -34.40, z-score = -2.01, R) >droSim1.chrX_random 3090630 94 - 5698898 CGGUCGCUCCUGCUGCUGCUGUGUGUGCUAUGUGUGCGUGUGCGAACGAACCAAAUAUAUACACACACGAGCGCUGGUAGGACAGUGAAAUCGA ((((((((((((((((.((((((((((.(((((((.(((......)))......)))))))))))))).))))).)))))))..))))..))). ( -36.90, z-score = -2.46, R) >droSec1.super_15 1721930 94 - 1954846 CGGUCGCUCCUGCUGCUGCUGUGUGUGCUAUGUGUGCGUGUGCGAACGAACCAAAUAUAUACACACACGAGCGCUGGUAGGACAGUGAAAUCGA ((((((((((((((((.((((((((((.(((((((.(((......)))......)))))))))))))).))))).)))))))..))))..))). ( -36.90, z-score = -2.46, R) >droYak2.chrX 10662207 82 + 21770863 CGGUCGCUCCUGCUGCUG------------UGUGUGCGUGUGUGAACGAACCAAAUAUAUACACACACGAGCGCUGGGAGGACAGUGAAAUCGA ..(((.(((((((.((((------------((((((..(((((...........)))))..))))))).))))).))))))))........... ( -32.10, z-score = -2.81, R) >droEre2.scaffold_4690 14635753 82 + 18748788 CGGUCGCUCCUGCUGCUG------------UGUGUGCGUGUGCGAACGAACCAAAUAUAUACACACACGAGCGCUGGGAGGACAGUGAAAUCGA ..(((.(((((((.((((------------((((((..((((.............))))..))))))).))))).))))))))........... ( -29.22, z-score = -1.64, R) >droAna3.scaffold_13417 6064678 83 + 6960332 GAGUUCUGUUUUCUGCUUCGAUUU------UCGCCGUGCGUGUGAACCGAUACGAAAUACGC-CACCCAUGAGCUGG----ACAGUGCAAUUGA ..((.((((((...((((((....------.))..((((((((.............))))).-)))....)))).))----)))).))...... ( -17.52, z-score = 0.49, R) >consensus CGGUCGCUCCUGCUGCUGCUGUGU______UGUGUGCGUGUGCGAACGAACCAAAUAUAUACACACACGAGCGCUGGUAGGACAGUGAAAUCGA ((((.((....)).)))).............(((((.(((((...............))))).)))))((.(((((......)))))...)).. (-18.52 = -18.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:17 2011