| Sequence ID | dm3.chrX |
|---|---|
| Location | 11,014,736 – 11,014,835 |
| Length | 99 |
| Max. P | 0.828794 |
| Location | 11,014,736 – 11,014,835 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 67.19 |
| Shannon entropy | 0.63309 |
| G+C content | 0.53564 |
| Mean single sequence MFE | -29.63 |
| Consensus MFE | -11.85 |
| Energy contribution | -11.64 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828794 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 11014736 99 - 22422827 CAAGCGCAUCUGCAAGAAGAUAUUUCCCGUGGACAAUAAGGCCAAGCGCAAGGCCAAGAACAAGGCGAAGGCCAAGUCUAUGGCCAAGUCGCUGGUCAA ..(((((((((......)))).....((((((((.....((((........))))........(((....)))..))))))))....).))))...... ( -34.10, z-score = -2.47, R) >droSec1.super_15 1718154 98 - 1954846 CCAGCGCAUCUGC-AGAAGAUCUUUCCCGUGGACAAUAAGGCCAAGCGCAAGGCCAAGAACAAGGCGAAGGCCAAGUCCAUGGCCAAGUCGCUGGUCAA (((((((....))-....((.(((..((((((((.....((((........))))........(((....)))..))))))))..)))))))))).... ( -42.60, z-score = -4.64, R) >droYak2.chrX 10658428 93 + 21770863 CAAGCGCAUCUGCAAGAAGAUCUUCCCCGUGGACAAUAAGGCCAAGCGCAAGGCCAAGAACAA------GGCCAAGUCCAUGGCCAAGUCGCUGGUCAA ..(((((....)).....((.(((..((((((((......((.....))..((((........------))))..))))))))..))))))))...... ( -30.40, z-score = -1.85, R) >droEre2.scaffold_4690 14631999 93 + 18748788 CAAGCGCAUCUGCAAGAAGAUCUUUCCCGUGGACAAUAAGGCCAAGCGCAAGGCCAAGAACAA------GGCCAAGUCUAUGGCCAAGUCGCUGGUCAA ...((((((((......))))........(((.(......)))).))))..(((((.((....------(((((......)))))...))..))))).. ( -28.40, z-score = -1.29, R) >droGri2.scaffold_14853 3010920 84 + 10151454 GAAACGUGUUUGUAAAAAGAUCUUUCCGAUGGAUAAUAAG---AAGCGCU---CCAAGAAACA------GGGCAAACCCAGUAAGAAGCAGUUGGU--- .....((((((.(......((((.......))))....).---)))))).---((((......------(((....))).((.....))..)))).--- ( -12.70, z-score = 0.63, R) >anoGam1.chrX 10924710 96 + 22145176 CGAGCUGGACAGCAUGACGAGCAAUGGGGGUGCGAACCAGAAGGAGAAUCGGUUUUACGACACGCAGAACGCCCACCCGGCCGGCCACUCG--GGUCG- ...(((((...((.......))..((((.(((((..((....))....(((......)))..)))...)).)))).)))))(((((.....--)))))- ( -29.60, z-score = 0.43, R) >consensus CAAGCGCAUCUGCAAGAAGAUCUUUCCCGUGGACAAUAAGGCCAAGCGCAAGGCCAAGAACAA______GGCCAAGUCCAUGGCCAAGUCGCUGGUCAA ...(((....))).....(((.....((((((((......((.....))..((((..............))))..))))))))....)))......... (-11.85 = -11.64 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:16 2011