Locus 14081

Sequence ID	dm3.chrX
Location	10,985,288 – 10,985,388
Length	100
Max. P	0.722144

overview

Window 6

Location	10,985,288 – 10,985,388
Length	100
Sequences	13
Columns	116
Reading direction	forward
Mean pairwise identity	60.93
Shannon entropy	0.78200
G+C content	0.50660
Mean single sequence MFE	-28.33
Consensus MFE	-10.60
Energy contribution	-11.32
Covariance contribution	0.72
Combinations/Pair	1.67
Mean z-score	-1.01
Structure conservation index	0.37
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.50
SVM RNA-class probability	0.722144
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 10985288 100 + 22422827
----------------UAACACUUCCUCUUCAUUUGCCUUUAAUCGCUUAGGCGACCAUUGCUUCGCUGGCGCUGGUCAUUGGUAGUGGAGCAGUUGCCCGCUCGAUUGAGUACCA
----------------......................((((((((....((((((...((((((((((.((........)).))))))))))))))))....))))))))..... ( -29.90, z-score =  -0.96, R)
>droAna3.scaffold_13417 6036514 84 - 6960332
--------------------------------UAACACUUCACUCGGACAGGCAACCAUUGCUUCGCUGGCUCUGGUCAUCGGUAGCGGUGCCGUGGCCAGGUCGAUUGAAUACCA
--------------------------------......((((.(((.(((((((.....)))))..((((((.(((.(((((....)))))))).))))))))))).))))..... ( -29.70, z-score =  -1.57, R)
>droEre2.scaffold_4690 14607764 99 - 18748788
-----------------UAACACUACCUUCCAUUUCCCUACAAUCGCUUAGGCGACCAUUGCUUCGCUGGCUCUGGUCAUCGGUAGCGGAGCAGUGGCCCGCUCCAUUGAGUACCA
-----------------............................(((((((((.((((((((((((((.(..........).))))))))))))))..))))....))))).... ( -31.60, z-score =  -1.85, R)
>droYak2.chrX 10637323 89 - 21770863
---------------------------UAACACUACCUUCCAAUCGCUUAGGCGACCAUUGCUUCGCUGGCUCUGGUCAUUGGUAGCGGAGCCGUGGCCCGUUCUAUUGAGUACCA
---------------------------..................((((((..(((((..(((.....)))..)))))..(((.(((((.((....)))))))))))))))).... ( -26.80, z-score =  -0.68, R)
>droSec1.super_15 1696327 100 + 1954846
----------------UAACACUUCCUCUUUAUUUGCCUUCAAUCGCUUAGGCGACCAUUGCUUCGCUGGCGCUGGUUAUCGGUAGCGGAGCAGUUGCCCGCUCCAUUGAGUACCA
----------------.........(((.......((((..........))))(((((.((((.....)))).)))))...((.(((((.((....)))))))))...)))..... ( -30.40, z-score =  -1.26, R)
>droSim1.chrX 8540509 100 + 17042790
----------------UAACACUUCCUCUUCAUUUGCCUUCAAUCGCUUAGGCGACCAUUGCUUCGCUGGCGCUGGUUAUCGGUAGCGGAGCAGUUGCCCGCUCCAUUGAGUACCA
----------------.........(((.......((((..........))))(((((.((((.....)))).)))))...((.(((((.((....)))))))))...)))..... ( -30.40, z-score =  -1.21, R)
>droWil1.scaffold_180702 1044730 91 + 4511350
-------------------------AACACACUUUCAUUUUAUUCUGACAGUGGAGUAUUGCAUCGCUUGCGCUGGUCAUUGGCAGCGGUGCUGUCGCUCGUUCUAUUGAGUAUCA
-------------------------(((.((((.(((........))).))))((((((.((((((((.((.(........))))))))))).)).)))))))............. ( -25.90, z-score =  -1.04, R)
>dp4.chrXL_group1e 899096 90 + 12523060
--------------------------UAAAACUUUCACUUCAUUCGAACAGUGGUCUAUUGCUUCGCUGGCGCUCGUCAUUGGCAGUGGGGCAGUAGCGCGUUCAAUUGAGUACCA
--------------------------..........((((.(((.((((.(((..((((((((((((((.((........)).)))))))))))))))))))))))).)))).... ( -31.10, z-score =  -2.90, R)
>droPer1.super_30 654256 90 - 958394
--------------------------UAAAACUUUCACUUCAUUCGAACAGUGGUCUAUUGCUUCGCUGGCGCUCGUCAUUGGCAGUGGGGCAGUAGCGCGUUCAAUUGAGUACCA
--------------------------..........((((.(((.((((.(((..((((((((((((((.((........)).)))))))))))))))))))))))).)))).... ( -31.10, z-score =  -2.90, R)
>droMoj3.scaffold_6328 899679 97 - 4453435
-------------------GAUAUCUAUAUGUAUGUAUAUGUUUACCGUAGUGGACACUAGCUUCGUUUGCUUUGGUCAUUGGCAGUGGAGCUGUCACACGCUCCAUUCAGUAUGA
-------------------(((((.((((....)))).)))))...((((.(((((...(((.......)))...)))......((((((((........)))))))))).)))). ( -23.90, z-score =   0.05, R)
>droVir3.scaffold_13042 2085753 92 - 5191987
-----------------------CAUACAUACAUGU-UGUUGUUCUCGUAGUGGACAUUCGCUUCACUGGCGCUCGUCGUCGGCAGCGGCGCUCUGACGCGCUCGAUGCAGUAUGA
-----------------------(((((..((....-.))(((..(((.(((((((...((((.....))))...)))(((((.(((...)))))))).))))))).)))))))). ( -27.40, z-score =   0.96, R)
>droGri2.scaffold_15081 3135778 116 + 4274704
AUCCCGGCAUCGCUGUAUGUAAACGUGUUUGUUGUUUUUGAUUUCUCAUAGUGGACAUGCGCUUCACUGGCGCUUGUCAUUGGCAGCGGUGCGGUGACACGUUCUAUGCAAUACCA
......((((((((((.....((((....))))...............(((((.(((.(((((.....))))).))))))))))))))))))((((....((.....))..)))). ( -35.60, z-score =  -0.56, R)
>anoGam1.chr3R 7843949 85 - 53272125
-------------------------------AAUUGUUUAUUUCUUUUCAGUCCGUUCUCGCCACAUUCGCGCUCAUGAUCGGUUCCGGAAUGGUGGCGCAGUCUAUUCCGUACAG
-------------------------------.....................(((.((.(((.......))).....)).)))...((((((((.........))))))))..... ( -14.50, z-score =   0.77, R)
>consensus
__________________________UCAUAAUUUCACUUCAUUCGCUUAGUCGACCAUUGCUUCGCUGGCGCUGGUCAUUGGUAGCGGAGCAGUGGCCCGCUCCAUUGAGUACCA
..........................................................(((((((((((.(..........).)))))))))))...................... (-10.60 = -11.32 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:16 2011