| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,982,381 – 10,982,486 |
| Length | 105 |
| Max. P | 0.808829 |
| Location | 10,982,381 – 10,982,486 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 74.35 |
| Shannon entropy | 0.46227 |
| G+C content | 0.50333 |
| Mean single sequence MFE | -28.32 |
| Consensus MFE | -19.08 |
| Energy contribution | -19.16 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.808829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10982381 105 + 22422827 GGAUGAUUCACCACCAAUCGAUGCCCCAGUGCCCGACUGUCUGCAUAAUGGACUUGGUGGCAUUGGAUGAUCAUGAUCGUCCGGCGCGAACCAAAACAUCGAAAC .((((...((((((((....((((..((((.....))))...))))..)))...)))))((.(((((((((....))))))))).)).........))))..... ( -33.10, z-score = -1.31, R) >droAna3.scaffold_13417 6033759 81 - 6960332 GUAUGAGUCAUCG---AAUGUUGCCCCAGUGCCCCAAUGUCUGCAUAAUGGAGAUAAUGGCGCUGAACAAAUCAAAAUAUAAAC--------------------- ............(---(...(((...(((((((....(((((.(.....).)))))..)))))))..))).))...........--------------------- ( -17.30, z-score = -1.38, R) >droYak2.chrX 10634472 105 - 21770863 AGAUGAUUCACCACCCAUCGAUGGCCCAGUGCCCGAGUGUCUGCAUAAUGGACCUAAUGGCAUUGGAUAAUCACGAUCGCCCGGCGCGAACCAAAACAUGAAAAC .((((..........))))(((...((((((((..((.((((.......))))))...))))))))...)))....((((.....))))................ ( -27.90, z-score = -0.96, R) >droSec1.super_15 1693446 102 + 1954846 GGAUGAUUCACCC---AUCGAUGCCCCAGUGCCCGACUGUCUGCAUAAUGGACUUGGUGGCAUUGGAUGAUCAUGAUCGUCCGCCGCGAACCAAAACAUUGAAAC .((((......((---((..((((..((((.....))))...)))).))))..(((((.((..((((((((....))))))))..))..)))))..))))..... ( -30.30, z-score = -1.06, R) >droSim1.chrX 8537656 102 + 17042790 GGAUGAUUCACCC---AUCGAUGCCCCAGUGCCCGACUGUCUGCAUAAUGGACUUGGUGGCAUUGGAUGAGCAUGAUCGUCCGGCGCGAACCAAAACAUCGAAAC .((((......((---((..((((..((((.....))))...)))).))))..(((((.((.((((((((......)))))))).))..)))))..))))..... ( -33.00, z-score = -1.27, R) >consensus GGAUGAUUCACCA___AUCGAUGCCCCAGUGCCCGACUGUCUGCAUAAUGGACUUGGUGGCAUUGGAUGAUCAUGAUCGUCCGGCGCGAACCAAAACAUCGAAAC ((((((((...........(((...((((((((.....((((.......)))).....))))))))...)))..))))))))....................... (-19.08 = -19.16 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:15 2011