| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,981,824 – 10,981,921 |
| Length | 97 |
| Max. P | 0.870093 |
| Location | 10,981,824 – 10,981,921 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 85.40 |
| Shannon entropy | 0.23949 |
| G+C content | 0.39071 |
| Mean single sequence MFE | -27.51 |
| Consensus MFE | -18.50 |
| Energy contribution | -19.98 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10981824 97 - 22422827 UGUAAUAAGUUUGCCGUCUAAUCAAUUCCAGAAUAUUUCAAACGAUUAGUACGAAUUCGAUGAUCCCAGGCG-------------GGAGAUUGGAUUUCCACAGAUUAUU .......((((((.(((((((((....................)))))).)))((((((((..((((....)-------------))).))))))))....))))))... ( -20.65, z-score = -0.85, R) >droSim1.chrX 8537094 97 - 17042790 UGUAAUCAGUGUGCCGUCUAAUCAAUUCCAGAAUAUUUCAAACGAUUAGUGCGAAUUCGAUGAUCCCAGACG-------------GGAGAUUGGAUUUCCACUGAUUAUU .((((((((((.((...((((((....................)))))).))(((((((((..((((....)-------------))).))))))))).)))))))))). ( -29.25, z-score = -3.09, R) >droSec1.super_15 1692899 97 - 1954846 UGUAAUCAGUGUGCCGUCUAAUCAAUUCCAGAAUAUUUCAAACGAUUAGUGCGAAUUCGGUGAUCCCAGACG-------------GGAGAUUGGAUUUCCACUGAUUAUU .((((((((((.(..((((((((....((.((((...((..((.....))..))))))))...((((....)-------------)))))))))))..))))))))))). ( -29.80, z-score = -2.90, R) >droYak2.chrX 10634059 105 + 21770863 -GUAAUCAGUGUGUCGUCUAAUCAAUUCCAGAAUAUUUCAAACGAUUAGUGCGAAUUCGAUGACCCCAACCGAUGAUCCCA----UUGGAUUGGAUUUCCACUGAUAAUU -...(((((((..((((((((((....................)))))).))))...........((((((((((....))----)))).)))).....))))))).... ( -27.55, z-score = -2.58, R) >droEre2.scaffold_4690 14604395 108 + 18748788 -GUAAUCAGUGAGUCGUCUAAUCAAUUCCAGAAUAUUUCAAGCGAUUAGUGUGAAUUCGAUGA-CCCAACCGAUGAUCCCAAGUGGGAGAUUGGAUUUCCACUGAUAAUU -...(((((((.((((((...((.......))....((((.((.....)).))))...)))))-)....(((((..((((....)))).))))).....))))))).... ( -30.30, z-score = -2.57, R) >consensus UGUAAUCAGUGUGCCGUCUAAUCAAUUCCAGAAUAUUUCAAACGAUUAGUGCGAAUUCGAUGAUCCCAGACG_____________GGAGAUUGGAUUUCCACUGAUUAUU .((((((((((.(..((((((((...(((.((.....))....(((((...((....)).)))))....................)))))))))))..))))))))))). (-18.50 = -19.98 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:14 2011