| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,980,616 – 10,980,713 |
| Length | 97 |
| Max. P | 0.871949 |
| Location | 10,980,616 – 10,980,713 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 85.61 |
| Shannon entropy | 0.18934 |
| G+C content | 0.51600 |
| Mean single sequence MFE | -26.00 |
| Consensus MFE | -20.32 |
| Energy contribution | -20.43 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10980616 97 - 22422827 AUAUCUGGCGGCCUGCUUGCGAUCUGCGAUCAACCGAUUGAGUUGAGCUUUGACCCAUGGAAAGAGGAGCGCGGUGGGCUAUCUACCCAUGAUAUCC ((((((((.((((..((.(((.((..(((((....))))).......((((..((...))..)))))).)))))..))))......))).))))).. ( -25.80, z-score = 0.72, R) >droSim1.chrX_random 3080319 84 - 5698898 --------AGACCUGCUUAC-----CCGAUCAACCGAUUGAGUUGAGCUUUGACCCAUGGAAAGAGAAGCCCAGUGGGCUAUCUACCCAUGAUAUCC --------......(((((.-----((((((....))))).).))))).......(((((..(((..(((((...))))).)))..)))))...... ( -26.10, z-score = -3.93, R) >droSec1.super_15 1691696 84 - 1954846 --------AGACCUGCUUAC-----CCGAUCAACCGAUUGAGUUGAGCUUUGACCCAUGGAAAGAGAAGCCCGGUGGGCUAUCUACCCAUGAUAUCC --------......(((((.-----((((((....))))).).))))).......(((((..(((..(((((...))))).)))..)))))...... ( -26.10, z-score = -3.34, R) >consensus ________AGACCUGCUUAC_____CCGAUCAACCGAUUGAGUUGAGCUUUGACCCAUGGAAAGAGAAGCCCGGUGGGCUAUCUACCCAUGAUAUCC ..............(((((.......(((((....)))))...))))).......(((((..(((..(((((...))))).)))..)))))...... (-20.32 = -20.43 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:13 2011