| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,950,864 – 10,950,962 |
| Length | 98 |
| Max. P | 0.660648 |
| Location | 10,950,864 – 10,950,962 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 94.08 |
| Shannon entropy | 0.08024 |
| G+C content | 0.49158 |
| Mean single sequence MFE | -32.23 |
| Consensus MFE | -29.85 |
| Energy contribution | -29.97 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.660648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10950864 98 - 22422827 -----ACGGAAAAGGAGGCGUGGGAGCAGCGAUAUCUGUUGUCCAUUGUCUUGGUUUUCAUCGUCCAUGGUCCCAUGAUUCCAUGGUUACCUUUACACGCCUU -----.........(((((((((((.(((((.....))))))))........(((..((((.(..((((....))))...).))))..)))....)))))))) ( -31.70, z-score = -1.61, R) >droSec1.super_15 1662549 103 - 1954846 GGGAAACGGAAAUGAAGGCGUGGGAGCAGCGAUAUCUGUUGUCCAUUGUCUUGGUUUUCAUCGUCCAUGGUCCCAUGAUUCCAUGGUUACCUUUACACGGCCU (((....((((((.(((((((((((((((......))))).)))).)))))).)))))).((((....(((.(((((....)))))..))).....))))))) ( -33.30, z-score = -1.02, R) >droSim1.chrX 8504328 98 - 17042790 -----ACGGAAAUGAAGGCGUGGGAGCAGCGAUAUCUGUUGUCCAUUGUCUUGGUUUUCAUCGUCCAUGGUCCCAUGAUUCCAUGGUUACCUUUACACGGCCU -----..((((((.(((((((((((((((......))))).)))).)))))).)))))).((((....(((.(((((....)))))..))).....))))... ( -31.70, z-score = -1.47, R) >consensus _____ACGGAAAUGAAGGCGUGGGAGCAGCGAUAUCUGUUGUCCAUUGUCUUGGUUUUCAUCGUCCAUGGUCCCAUGAUUCCAUGGUUACCUUUACACGGCCU .......((((((.(((((((((((((((......))))).)))).)))))).))))))..(((....(((.(((((....)))))..))).....))).... (-29.85 = -29.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:09 2011