| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,948,421 – 10,948,534 |
| Length | 113 |
| Max. P | 0.724063 |
| Location | 10,948,421 – 10,948,534 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 95.74 |
| Shannon entropy | 0.07270 |
| G+C content | 0.48319 |
| Mean single sequence MFE | -30.56 |
| Consensus MFE | -28.66 |
| Energy contribution | -28.66 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724063 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10948421 113 + 22422827 GUAUUUUGCGGGGCGUGGUCUGUCAACUCAUUAGCUGGGUCUUUAUCCCCAACUCGCUUCUUGUGGCAACAUCGUCCUGCCAACAACCUUAAGUAGCUUAAAAGCUUUUUUCC .......((((((((..((.(((((.......(((((((........))))....))).....)))))))..))))))))..............((((....))))....... ( -28.30, z-score = -1.46, R) >droSim1.chrX_random 3065135 113 + 5698898 GUGUUUUGCGGGGCGUGGUCUGUCAACUCAUUAGCUGGGUCUUUAUCCCCAACUUGCUUCUUGUGGCAACAUCGUCCUGCCAACAACCUUAAGUAGCUUAAAAGCUUUUUUCC .((((..((((((((..((.(((((.......(((((((........))))....))).....)))))))..)))))))).)))).........((((....))))....... ( -30.20, z-score = -1.57, R) >droSec1.super_15 1660140 113 + 1954846 GUGUUUUGCGGGGCGUGGUCUGUCAACUCAUUAGCUGGGUCUUUAUCCCCAACUCGCUUCUUGUGGCAACAUCGUCCUGCCAACAACCUUAAGUAGCUUAAAAGCUUUUUUCC .((((..((((((((..((.(((((.......(((((((........))))....))).....)))))))..)))))))).)))).........((((....))))....... ( -30.20, z-score = -1.72, R) >droYak2.chrX 10601332 111 - 21770863 --GUGCUGCGGGGCGUGGUCUGUCAACUCAUUAGCUGGGUCUUUAUCCCCAAGUUGCUUCUUGUGGCAACAGCGUCCUGCCAACAACCUUAAGUAGCUUAAAAGCUUUUUUCC --((...(((((((((.((.(((((......((((((((........))).))))).......))))))).)))))))))..))..........((((....))))....... ( -32.52, z-score = -1.04, R) >droEre2.scaffold_4690 14572834 111 - 18748788 --GGGUUGCGGGGCGUGGUCUGUCAACUCAUUAGCUGGGUCUUUAUCCCCAACUCGCUUCUUGUGGCAACAUCGUCCUGCCAACAACCUUAAGCAGCUUAAAAGCUUUUUUCC --(((((((((((((..((.(((((.......(((((((........))))....))).....)))))))..))))))))....))))).....((((....))))....... ( -31.60, z-score = -1.19, R) >consensus GUGUUUUGCGGGGCGUGGUCUGUCAACUCAUUAGCUGGGUCUUUAUCCCCAACUCGCUUCUUGUGGCAACAUCGUCCUGCCAACAACCUUAAGUAGCUUAAAAGCUUUUUUCC .......((((((((..((.(((((.......(((((((........))))....))).....)))))))..))))))))..............((((....))))....... (-28.66 = -28.66 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:08 2011