| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,944,294 – 10,944,385 |
| Length | 91 |
| Max. P | 0.678308 |
| Location | 10,944,294 – 10,944,385 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 77.44 |
| Shannon entropy | 0.41042 |
| G+C content | 0.49295 |
| Mean single sequence MFE | -30.08 |
| Consensus MFE | -22.69 |
| Energy contribution | -23.83 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.678308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10944294 91 - 22422827 UACUUUUGUACAUGCUUGUAUGAGCCUGGUGAUUUGUGGGGCGUGUCACAGCCCCUUUUGUCGUCAUACCUGCAGAAUAGUGCAGUUGGGC---------------- .....(..((((....))))..)(((((..(((....(((((........)))))....)))..)....(((((......)))))..))))---------------- ( -30.50, z-score = -1.31, R) >droSim1.chrX 8498552 91 - 17042790 UACUUUUGUACAUGCAUGUAUGAGCCUUGUGAUUUGUGGGGCGUGUCACAGCCCCUUUUGUCGUCAUACCUGCAGAAUAGUGCAGUUGGGC---------------- ..(..((((((.((((.((((((......((((....(((((........)))))....)))))))))).)))).....))))))..)...---------------- ( -30.20, z-score = -1.45, R) >droSec1.super_15 1656034 90 - 1954846 UACUUUUGUACAUGCAUGUACGAGCCUUGUGAUUUGUGGGGCGUGUC-CAGCCCCUUUUGUCGUCAUACCUGCAGAAUAGUGCAGUUGGGC---------------- .....(((((((....)))))))((((((((((....(((((.....-..)))))....)))).))...(((((......)))))..))))---------------- ( -29.60, z-score = -1.43, R) >droYak2.chrX 10597140 101 + 21770863 UACUGUUGUACAUACAUGUAUGAGCUUGGUGAUUUGUGGGGCGUGUCACAGCCCCUUUUGUCGUCAUACCUGCAGAAUAGUGCGGAAUAGUGCAGUUGGGC------ ..(..((((((......((((((...(((..(.....(((((........)))))..)..)))))))))(((((......)))))....))))))..)...------ ( -30.10, z-score = -0.05, R) >droEre2.scaffold_4690 14568916 91 + 18748788 UACUUGUGUACAUACAUGUACGAGCCUGGUGAUUUGUGGGGCGUGUCACAGCCCCUUUUGUUGUCAUACCUGCAGAAUAGUGCAGUUGGGC---------------- ......((((((....)))))).((((((..((....(((((........)))))....))..))....(((((......)))))..))))---------------- ( -30.00, z-score = -0.81, R) >droAna3.scaffold_13417 5989449 100 + 6960332 ----UCCUUACACACACAUAU---CCUGAUGAUAUGUGGGGCGUGUCGCAGCCCCUUCUGUCGUCAUACCUGCAACAUGCGGCAGCGAAAAGUGCAGUUGUAUCUUA ----....((((.........---..((((((((...(((((........)))))...))))))))...(((((...(((....))).....))))).))))..... ( -30.10, z-score = -1.07, R) >consensus UACUUUUGUACAUACAUGUAUGAGCCUGGUGAUUUGUGGGGCGUGUCACAGCCCCUUUUGUCGUCAUACCUGCAGAAUAGUGCAGUUGGGC________________ .....(((((((....)))))))((((((((((....(((((........)))))....))))))....(((((......)))))..))))................ (-22.69 = -23.83 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:07 2011