Locus 14069

Sequence ID dm3.chrX
Location 10,936,801 – 10,936,917
Length 116
Max. P 0.500000
window19348

overview

Window 8

Location 10,936,801 – 10,936,917
Length 116
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 95.69
Shannon entropy 0.06994
G+C content 0.30603
Mean single sequence MFE -18.73
Consensus MFE -17.86
Energy contribution -17.30
Covariance contribution -0.56
Combinations/Pair 1.14
Mean z-score -1.05
Structure conservation index 0.95
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.02
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>dm3.chrX 10936801 116 + 22422827
CAAAAAUUACGCUAUGCAAACUAAUAACGCAUAAUAGGUUCGGUAAUUAUCUAACCGUUGACCUUUCGCUUUUCAAUCAGUUUUGUUUGAUUAAUUGUGGCUCUUAAUUAAUAUUC
..........(((((((...........)))))..(((((((((.........))))..)))))..(((..((.((((((......))))))))..)))))............... ( -18.10, z-score =  -0.76, R)
>droSim1.chrX 8490849 116 + 17042790
CAAAAAUUUCGCUAUGCAAACUAAUAAUGCAUAAUAGGUUCGGUAAUUAUCUAACCGUUGACCUUUCGCUUUUCAAUCAGUUUUGUUUGAUUAAUUGUGGCUCUUAAUUAAUAUUC
..........((((((((.........))))))..(((((((((.........))))..)))))..(((..((.((((((......))))))))..)))))............... ( -19.20, z-score =  -1.27, R)
>droSec1.super_15 1648489 116 + 1954846
CAAAAAUUUCGCUAUGCAAACUAAUAAUGCAUAAUAGGUUCGGUAAUUAUCUAACCGUUGACCUUUCGCUUUUCAAUCAGUUUUGUUUGAUUAAUUGUGGCUCUUAAUUAAUAUUC
..........((((((((.........))))))..(((((((((.........))))..)))))..(((..((.((((((......))))))))..)))))............... ( -19.20, z-score =  -1.27, R)
>droEre2.scaffold_4690 14561550 116 - 18748788
CAAAAAUUUUGUUACACAAACUAACAAUGCAUAAUAGGUUCGGUAAUUAUCAAACCGUCGACCUUUCGCUUUUCAGUCAGUUUUGUUUGAUUAAUUGUGGCUCUUAAUUAAUAUUC
....((((..(...(((((.........((.....(((((((((.........))))..)))))...)).....((((((......))))))..)))))...)..))))....... ( -18.40, z-score =  -0.90, R)
>consensus
CAAAAAUUUCGCUAUGCAAACUAAUAAUGCAUAAUAGGUUCGGUAAUUAUCUAACCGUUGACCUUUCGCUUUUCAAUCAGUUUUGUUUGAUUAAUUGUGGCUCUUAAUUAAUAUUC
..........(((((.............((.....(((((((((.........))))..)))))...)).....((((((......))))))....)))))............... (-17.86 = -17.30 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:33:00 2011