| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,923,128 – 10,923,228 |
| Length | 100 |
| Max. P | 0.731287 |
| Location | 10,923,128 – 10,923,228 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 88.89 |
| Shannon entropy | 0.15305 |
| G+C content | 0.27614 |
| Mean single sequence MFE | -16.88 |
| Consensus MFE | -13.58 |
| Energy contribution | -13.14 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10923128 100 - 22422827 UCUACUCACGGUACUUAUAUAUCUGUAGAAUGUAAAAUAAAAUCAGAUAUAAUUCCAAAGGGCUUAAAAUAUAUUUAUUAUUUCAAGACUCUU--AGUACUU .........((((((..((((((((..................))))))))......((((((((.(((((.......))))).))).)))))--)))))). ( -18.77, z-score = -2.68, R) >droSec1.super_15 1635657 102 - 1954846 UCUACUCACCGUACUCAUAUAUCUGCAGGAUAUAAAACAAAAUCAGAUAUAGUUCCAAAGAGCUAAAAAUAUAUUUAUUAUUUCAUGACUCUUAUAGUACCU ..........(((((..((((((((..................))))))))......((((((...(((((.......)))))...).)))))..))))).. ( -14.47, z-score = -1.46, R) >droSim1.chrX 8476443 102 - 17042790 UCUACGCACCGUACUCAUAUAUCUGCAGGAUAUAAAACAUAAUCAGAUAUAGUUCCAAAGAGCUAAAAAUAUAUUUAUUAUUUCAUGGCUUUUAUAGUACCU ..........(((((..((((((((.(..((.......))..)))))))))......((((((((.(((((.......)))))..))))))))..))))).. ( -17.40, z-score = -1.74, R) >consensus UCUACUCACCGUACUCAUAUAUCUGCAGGAUAUAAAACAAAAUCAGAUAUAGUUCCAAAGAGCUAAAAAUAUAUUUAUUAUUUCAUGACUCUUAUAGUACCU ..........(((((..((((((((..................))))))))......((((((...(((((.......)))))...).)))))..))))).. (-13.58 = -13.14 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:56 2011