| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,922,478 – 10,922,589 |
| Length | 111 |
| Max. P | 0.522033 |
| Location | 10,922,478 – 10,922,589 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 92.46 |
| Shannon entropy | 0.12806 |
| G+C content | 0.54911 |
| Mean single sequence MFE | -39.79 |
| Consensus MFE | -33.02 |
| Energy contribution | -33.78 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10922478 111 + 22422827 UUGGCCAGCCACGUCACGCAGCUGGUGAAAAUUUGCUGGCCAGUUGGCCAUCGGGACAACCGAGCAUCAGAUGGCUGACUGGGCAUAUUUUUUUUCC-CCCAACAGCAACGC .((((((((....((((.......))))......))))))))((..((((((((.....))(.....).))))))..))((((..............-)))).......... ( -39.74, z-score = -1.54, R) >droEre2.scaffold_4690 14547282 107 - 18748788 UUGGCCAGCCACGUCACGCAGAUGGUGAAAAUUUGCUGGCCAGUUGGCCAACGGGACAUUCGAGCAUCAGAUGGCUGACGGGGCAUAUUUUUU-----CCCAGCGGCAACGG (((((((((...((((.((((((.......))))))))))..))))))))).(((((((..(.....)..)))(((.....)))........)-----)))..((....)). ( -37.90, z-score = -1.22, R) >droYak2.chrX 10575158 108 - 21770863 UUGGCCAGCCACGUCACGCAGAUGGUGAAAAUUUGCAGGCCAGUUGGCCAACGGGACAUUCGAGCAUCAGAUGGCUGACUGGGCAUAUUUUUUU----CCCAACGGCAACGC (((((((((...(((..((((((.......)))))).)))..))))))))).(((((((..(.....)..)))(((.....))).........)----)))..((....)). ( -34.70, z-score = -0.81, R) >droSec1.super_15 1635007 112 + 1954846 UUGGCCAGCCACGUCACGCAGCUGGUGAAAAUUUGCUGGCCCGUUGGGCAUCGGGACAACCGAGCAUCAGAUGGCUGACUGGGCAUAUUUUUUUUUCGCCCAACAGCAACGC ..(((((((....((((.......))))......))))))).(((((((.((((.....))))((.((((........)))))).............)))))))........ ( -42.60, z-score = -1.97, R) >droSim1.chrX 8475793 112 + 17042790 UUGGCCAGCCACGUCACGCAGCUGGUGAAAAUUUGCUGGCCAGUUGGCCAUCGGGACAACCGAGCAUCAGAUGGCUGACUGGGCAUAUUUUUUUUUCGCCCAACAGCAACGC .((((((((....((((.......))))......))))))))((..((((((((.....))(.....).))))))..))(((((.............))))).......... ( -44.02, z-score = -2.67, R) >consensus UUGGCCAGCCACGUCACGCAGCUGGUGAAAAUUUGCUGGCCAGUUGGCCAUCGGGACAACCGAGCAUCAGAUGGCUGACUGGGCAUAUUUUUUUU_C_CCCAACAGCAACGC .((((((((....((((.......))))......))))))))((..((((((((.....))(.....).))))))..)).(((...............)))........... (-33.02 = -33.78 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:56 2011