Locus 14063

Sequence ID dm3.chrX
Location 10,915,486 – 10,915,594
Length 108
Max. P 0.962614
window19340 window19341

overview

Window 0

Location 10,915,486 – 10,915,594
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 97.59
Shannon entropy 0.04241
G+C content 0.45000
Mean single sequence MFE -30.44
Consensus MFE -28.02
Energy contribution -28.14
Covariance contribution 0.12
Combinations/Pair 1.06
Mean z-score -1.63
Structure conservation index 0.92
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.51
SVM RNA-class probability 0.725641
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 10915486 108 + 22422827
AGCUGGAUAUCCUGGCAACAGAUUCCACUGGCGGAUACAUGCGGAUCCACUUUAUUAUGCGGAUUUUUCGUUGCCUUUGGAUUACGAUUUGUAUCUGUGUCCCUCUCA
((.((((....(((....)))..)))))).(((((((((..((((((((.........(((((...)))))......)))))).))...))))))))).......... ( -30.16, z-score =  -1.48, R)
>droSim1.chrX 8467815 108 + 17042790
AGCUGGAUAUCCUGGCAACAGAUUCCACUGGCGGAUACAUGCGGAUCCACUUUAUUAUGCGGAUUUUUCGUUGCCUUUGGAUUACGAUUUGUAUCUGUGUCCCUUUCA
((.((((....(((....)))..)))))).(((((((((..((((((((.........(((((...)))))......)))))).))...))))))))).......... ( -30.16, z-score =  -1.65, R)
>droSec1.super_15 1626904 108 + 1954846
AGCUGGAUAUCCUGGCAACAGAUUCCACUGGCGGAUACAUGCGGAUCCACUUUAUUAUGCGGAUUUUUCGUUGCCUUUGGAUUACGAUUUGUAUCUGUGUCCCUUUCA
((.((((....(((....)))..)))))).(((((((((..((((((((.........(((((...)))))......)))))).))...))))))))).......... ( -30.16, z-score =  -1.65, R)
>droYak2.chrX 10567642 108 - 21770863
AGGUGGAUAUCCUGGCAACAGAUUCCACUGCCGGAAACAUGCGGAUCCACUUUAUUAUGCGGAUUUUUCGUUGCCUUUGGAUUACGAUUUGUAUCUGCGUCCCUUUCA
((((((((...(((....)))......((((.(....)..))))))))))))....((((((((...((((..((...))...)))).....))))))))........ ( -33.50, z-score =  -2.53, R)
>droEre2.scaffold_4690 14538527 108 - 18748788
AGCUGGAUAUCCUGGCAACAGAUUCCACCGGCGGAAACAUGCGGAUCCACUUUAUUAUGCGGAUUUUUCGUUGCCUUUGGAUUACGAUUUGUAUCUGUGUCCCUUUCA
....((((((.(((....)))..((((..((((....)..((((((((.(........).)))))...))).)))..))))...............))))))...... ( -28.20, z-score =  -0.85, R)
>consensus
AGCUGGAUAUCCUGGCAACAGAUUCCACUGGCGGAUACAUGCGGAUCCACUUUAUUAUGCGGAUUUUUCGUUGCCUUUGGAUUACGAUUUGUAUCUGUGUCCCUUUCA
.(((((.....(((....)))......)))))((((((((((((((((.(........).)))))).((((..((...))...))))...)))..)))))))...... (-28.02 = -28.14 +   0.12)

alignment

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secondary structure

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dotplot

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Window 1

Location 10,915,486 – 10,915,594
Length 108
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 97.59
Shannon entropy 0.04241
G+C content 0.45000
Mean single sequence MFE -29.42
Consensus MFE -28.96
Energy contribution -28.80
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -1.99
Structure conservation index 0.98
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.71
SVM RNA-class probability 0.962614
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 10915486 108 - 22422827
UGAGAGGGACACAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAUGUAUCCGCCAGUGGAAUCUGUUGCCAGGAUAUCCAGCU
..((..(((....(((....)))...((((...(((((((.....(((((........)))))(((((.((.......)))))))...))))))).)))).)))..)) ( -29.70, z-score =  -2.12, R)
>droSim1.chrX 8467815 108 - 17042790
UGAAAGGGACACAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAUGUAUCCGCCAGUGGAAUCUGUUGCCAGGAUAUCCAGCU
......(((....(((....)))...((((...(((((((.....(((((........)))))(((((.((.......)))))))...))))))).)))).))).... ( -28.70, z-score =  -2.05, R)
>droSec1.super_15 1626904 108 - 1954846
UGAAAGGGACACAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAUGUAUCCGCCAGUGGAAUCUGUUGCCAGGAUAUCCAGCU
......(((....(((....)))...((((...(((((((.....(((((........)))))(((((.((.......)))))))...))))))).)))).))).... ( -28.70, z-score =  -2.05, R)
>droYak2.chrX 10567642 108 + 21770863
UGAAAGGGACGCAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAUGUUUCCGGCAGUGGAAUCUGUUGCCAGGAUAUCCACCU
......(((....(((....)))...((((...(((((((.....(((((........)))))(((((.(((.....))))))))...))))))).)))).))).... ( -31.10, z-score =  -2.20, R)
>droEre2.scaffold_4690 14538527 108 + 18748788
UGAAAGGGACACAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAUGUUUCCGCCGGUGGAAUCUGUUGCCAGGAUAUCCAGCU
......(((....(((....)))...((((...(((((((.....(((((........)))))(((((..((....))..)))))...))))))).)))).))).... ( -28.90, z-score =  -1.52, R)
>consensus
UGAAAGGGACACAGAUACAAAUCGUAAUCCAAAGGCAACGAAAAAUCCGCAUAAUAAAGUGGAUCCGCAUGUAUCCGCCAGUGGAAUCUGUUGCCAGGAUAUCCAGCU
......(((....(((....)))...((((...(((((((.....(((((........)))))(((((.((.......)))))))...))))))).)))).))).... (-28.96 = -28.80 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:55 2011