| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,915,366 – 10,915,458 |
| Length | 92 |
| Max. P | 0.785072 |
| Location | 10,915,366 – 10,915,458 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 94.93 |
| Shannon entropy | 0.06987 |
| G+C content | 0.59058 |
| Mean single sequence MFE | -31.20 |
| Consensus MFE | -29.15 |
| Energy contribution | -28.93 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.785072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10915366 92 - 22422827 GAAUGUACCACGAGCAUGUGGGUAUAAGUUGGUGGAGCAGCAGAAGCGGCGGAAGCUGUGCAAGCUGCUGGGACGAAGGACGAGGCAAUUCU ((((((.((((.(((.(((....))).))).))))((((((....(((((....)))))....))))))...............)).)))). ( -32.40, z-score = -2.61, R) >droSim1.chrX 8467695 92 - 17042790 GAAUGUACCACGAGCAUGUGGGGAUAAGUUGGCGGAGCAGCAGGAGCGGCGGAAGCUGUGCAAGCUGCUGGGACGAGGGACGUGGCAAACCU .......((((......))))......(((.((..((((((..(.(((((....))))).)..))))))...(((.....))).)).))).. ( -30.60, z-score = -1.07, R) >droSec1.super_15 1626784 92 - 1954846 GAAUGUACCACGAGCAUGUGGGGAUAAGUUGGCGGAGCAGCAGGAGCGGCGGAAGCUGUGCAAGCUGCUGGGACGAGGGACGUGGCAAACCU .......((((......))))......(((.((..((((((..(.(((((....))))).)..))))))...(((.....))).)).))).. ( -30.60, z-score = -1.07, R) >consensus GAAUGUACCACGAGCAUGUGGGGAUAAGUUGGCGGAGCAGCAGGAGCGGCGGAAGCUGUGCAAGCUGCUGGGACGAGGGACGUGGCAAACCU ...(((.((((......))))......(((..((.((((((....(((((....)))))....))))))....))...)))...)))..... (-29.15 = -28.93 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:53 2011