| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,904,442 – 10,904,493 |
| Length | 51 |
| Max. P | 0.993821 |
| Location | 10,904,442 – 10,904,493 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 97.39 |
| Shannon entropy | 0.03601 |
| G+C content | 0.48366 |
| Mean single sequence MFE | -17.27 |
| Consensus MFE | -16.63 |
| Energy contribution | -16.63 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.99 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.65 |
| SVM RNA-class probability | 0.993821 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10904442 51 - 22422827 AGUGCAAUGUCGUCGUGUGGAAACAUGGCGAAUAUUUGUGUCCAGCGAGAG .(..(((..(((((((((....)))))))))....)))..).......... ( -17.00, z-score = -2.73, R) >droSim1.chrX 8457401 51 - 17042790 AGUGCAAUUUCGUCGUGUGGAAACAUGGCGAAUAUUUGUGUCCAGCCAGAG .(..(((.((((((((((....))))))))))...)))..).......... ( -17.80, z-score = -3.39, R) >droSec1.super_15 1616083 51 - 1954846 AGUGCAAUGUCGUCGUGUGGAAACAUGGCGAAUAUUUGUGUCCAGCCAGAG .(..(((..(((((((((....)))))))))....)))..).......... ( -17.00, z-score = -2.85, R) >consensus AGUGCAAUGUCGUCGUGUGGAAACAUGGCGAAUAUUUGUGUCCAGCCAGAG .(..(((..(((((((((....)))))))))....)))..).......... (-16.63 = -16.63 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:52 2011