Locus 1406

Sequence ID dm3.chr2L
Location 10,967,808 – 10,967,898
Length 90
Max. P 0.775434
window1919

overview

Window 9

Location 10,967,808 – 10,967,898
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 90.78
Shannon entropy 0.16515
G+C content 0.42513
Mean single sequence MFE -22.36
Consensus MFE -19.72
Energy contribution -19.64
Covariance contribution -0.08
Combinations/Pair 1.14
Mean z-score -1.58
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.65
SVM RNA-class probability 0.775434
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 10967808 90 + 23011544
UGCAACAGCAACAAUAAUUGCGACAACGCGAUAAUUAAGGUGCGGACCAUUAAUUUAUGCUCACUCCAGGCUUCAAAAGCCAGUUGAAUA
..((((((((......((((((....))))))(((((((((....))).))))))..)))).......((((.....)))).)))).... ( -22.10, z-score =  -1.97, R)
>droEre2.scaffold_4929 12159992 87 - 26641161
---UGCAACAACAACAACUGCGAGAACGCGAUAAUUAAGGUGCGGGCCACAUAUUUAUGCUCACUCCAGGCUUAAAAAGCCAGUUGAAUU
---...........((((((((....))).........((.(.((((...........)))).).)).((((.....))))))))).... ( -19.90, z-score =  -1.01, R)
>droYak2.chr2L 7359648 90 + 22324452
UGCAACAGCAACAACAAUUGCGACGACGCGAUAAUUAAGGUGCGGGCCAUAAAUAUAUGCUCACUCCAGGCUUUAAAGGCCAGUUGAAUU
(((....))).((((.((((((....))))))......((.(.((((.(((....))))))).).)).((((.....)))).)))).... ( -25.00, z-score =  -2.03, R)
>droSec1.super_3 6368648 90 + 7220098
UGCAACAGCAACAAUAAUUGCGACAACGCGAUAAUUAAGGUGCGGGCCAUUAAUUUAUGCUCACUCCAGGCUUCAAAAGCCAGUUGAAUU
.....((((...(((.((((((....)))))).)))..((.(.((((.((......)))))).).)).((((.....)))).)))).... ( -22.70, z-score =  -1.53, R)
>droSim1.chr2L 10764575 90 + 22036055
UGCAACAGCAACAAUAAUUGCGACAACGCGAUAAUUAAGGUGCGGGCCAUUAAUUUAUGCUCAUUCCAGGCUUCAAAAGCCAGUUGAAUU
..((((.(((..(((.((((((....)))))).)))....)))((((.((......))))))......((((.....)))).)))).... ( -22.10, z-score =  -1.34, R)
>consensus
UGCAACAGCAACAAUAAUUGCGACAACGCGAUAAUUAAGGUGCGGGCCAUUAAUUUAUGCUCACUCCAGGCUUCAAAAGCCAGUUGAAUU
.....((((.......((((((....))))))......((.(.((((...........)))).).)).((((.....)))).)))).... (-19.72 = -19.64 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:20 2011