| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,898,157 – 10,898,215 |
| Length | 58 |
| Max. P | 0.540234 |
| Location | 10,898,157 – 10,898,215 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 92.59 |
| Shannon entropy | 0.13180 |
| G+C content | 0.49655 |
| Mean single sequence MFE | -16.32 |
| Consensus MFE | -15.56 |
| Energy contribution | -15.24 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.540234 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10898157 58 - 22422827 GUUUUUGGCUAAUGUCGGACAUUCGUCAGGACCCGGAUGAGGAAAAAACUUGGCCGAA ...(((((((((.((......((((((.(....).))))))......))))))))))) ( -16.60, z-score = -1.14, R) >droEre2.scaffold_4690 14522555 58 + 18748788 GCUUUUGGCUAAUGUCGGACAUUCGUCAGGACCCAGAUGAGGGAAAAACUUGGUCGAA ..(((((((.((((.....)))).)))))))....(((.(((......))).)))... ( -13.70, z-score = -0.14, R) >droYak2.chrX 10550608 58 + 21770863 ACUUUUGGCUAAUGUCGGACAUUCGUCAGGGCUCAGAUGGGGCAACAACUUGGCCGAA ...(((((((((.((.((((....)))...((((.....))))..).))))))))))) ( -17.30, z-score = -1.53, R) >droSec1.super_15 1609962 58 - 1954846 GUUUUUGGCUAAUGUCGGACAUUCGUCAGGACCCGGAUGAGGGAAAAACUUGGCCGAA ...(((((((((.((..(((....)))....(((......)))....))))))))))) ( -17.00, z-score = -0.96, R) >droSim1.chrX 8449431 58 - 17042790 GUUUUUGGCUAAUGUCGGACAUUCGUCAGGACCCGGAUGAGGGAAAAACUUGGCCGAA ...(((((((((.((..(((....)))....(((......)))....))))))))))) ( -17.00, z-score = -0.96, R) >consensus GUUUUUGGCUAAUGUCGGACAUUCGUCAGGACCCGGAUGAGGGAAAAACUUGGCCGAA ...(((((((((.((......((((((.(....).))))))......))))))))))) (-15.56 = -15.24 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:50 2011