| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,876,661 – 10,876,822 |
| Length | 161 |
| Max. P | 0.857681 |
| Location | 10,876,661 – 10,876,822 |
|---|---|
| Length | 161 |
| Sequences | 3 |
| Columns | 161 |
| Reading direction | forward |
| Mean pairwise identity | 87.47 |
| Shannon entropy | 0.16955 |
| G+C content | 0.50733 |
| Mean single sequence MFE | -42.16 |
| Consensus MFE | -36.10 |
| Energy contribution | -37.10 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857681 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10876661 161 + 22422827 GCCACUGCCAGUUUUCCCACCCACCGCUCAUCGCCCAACUUUCUACGCCCUUUCUCCUGCAGAGAAAGCAGCUUCUGCUUCUGCUCCUGCUGCUUUCUUUCACGUACUCUGGCUUUCUUGUUUGGAGUUUGGCAGAUCCGUUUUUUGCCUUGGCUUUUCGA (((((((((((..((((........((.....))............(((......(.((.((((((((((((....((....))....)))))))))))))).)......)))..........)))).)))))))....((.....))..))))....... ( -45.70, z-score = -3.17, R) >droSec1.super_15 1578770 148 + 1954846 GCCAGUGCCAGUUUUCCCACC-----------GCCCAACUUUCUACGCCCUUUCUCCUGCAGAGAAAGCAGCUUCUGCUUCUGCUCCUGCUG-UUUCUUUCACGUACUCCGGCUUUCUUGUUUGGAGUUUGGCAGAUCCGUUUUU-GCCUUGGCUUUUGGA .((((.(((((..........-----------...........((((..(((((((.....)))))))((((....((....))....))))-.........))))(((((((......).))))))...((((((......)))-))))))))..)))). ( -40.10, z-score = -1.06, R) >droYak2.chrX 10523278 142 - 21770863 GCCACUGCCAGUCA------------------GCGCAACUUUCUACGCCCUUUCUCCUGCAGAGAAAGCAGCUUCUUCUUCUGCUCCUGCUGCUUUCUUUCACGUACUCUGGCUUUCUUGUUUGGAGUUUGGCAGAUCCGUUUUU-GCAUUGGCUUUUAGC ((((.(((......------------------(((..........)))........((((((((((((((((................))))))))))))..((.((((..((......).)..)))).))))))..........-))).))))....... ( -40.69, z-score = -1.28, R) >consensus GCCACUGCCAGUUUUCCCACC___________GCCCAACUUUCUACGCCCUUUCUCCUGCAGAGAAAGCAGCUUCUGCUUCUGCUCCUGCUGCUUUCUUUCACGUACUCUGGCUUUCUUGUUUGGAGUUUGGCAGAUCCGUUUUU_GCCUUGGCUUUUAGA (((((((((((...................................(((......(.((.((((((((((((....((....))....)))))))))))))).)......))).((((.....)))).)))))))....((.....))..))))....... (-36.10 = -37.10 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:46 2011