Locus 14053

Sequence ID dm3.chrX
Location 10,852,092 – 10,852,279
Length 187
Max. P 0.981055
window19323 window19324

overview

Window 3

Location 10,852,092 – 10,852,188
Length 96
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 95.53
Shannon entropy 0.07881
G+C content 0.41634
Mean single sequence MFE -27.98
Consensus MFE -21.24
Energy contribution -20.92
Covariance contribution -0.32
Combinations/Pair 1.08
Mean z-score -2.40
Structure conservation index 0.76
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.44
SVM RNA-class probability 0.697273
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 10852092 96 - 22422827
UGCCGCGGUAUUUCUUUUGUUUUGCCAGAGCUUUAGUUAAUUAAAAAUUCGAAAUUAAUGCCAGUUGUCCGUCCGUUUUGGAUGG-AUUUACGGCGG
..((((((((((..(((((..((.....(((....))).......))..)))))..)))))).((.((((((((.....))))))-))..)).)))) ( -29.80, z-score =  -3.02, R)
>droSim1.chrX 8405444 95 - 17042790
UGCCGCGGUAUUUC-UUUGUUUUGCCUGAGCUUCAGUUAAUUAAAAAUUCGAAAUUAAUGCCAGUUGUCCGUCCGUUUUGGAUGG-AUUUACGGCGG
..((((((((((..-((((..((.....(((....))).......))..))))...)))))).((.((((((((.....))))))-))..)).)))) ( -27.50, z-score =  -2.20, R)
>droSec1.super_15 1554405 96 - 1954846
UGCCGCGGUAUUUC-UUUGUUUUGCCUGAGCUUCAGUUAAUUAAAAAUUCGAAAUUAAUGCCAGUUGUCCGUCCGUUUUGGAUGGAAUUUACGGCGG
..((((((((((..-((((..((.....(((....))).......))..))))...)))))).((..(((((((.....)))))))....)).)))) ( -26.20, z-score =  -1.74, R)
>droYak2.chrX 10498673 96 + 21770863
UGCCUCGGUAUUUCUUUUGUUUUGCCCGAGCUUCAGUUAAUUAAAAAUUCGAAAUUAAUGCCAGUUGUCCGUCCGUUUUGGAUGG-AUUUACGGCGG
.(((..((((((..(((((..((.....(((....))).......))..)))))..)))))).((.((((((((.....))))))-))..))))).. ( -28.70, z-score =  -2.88, R)
>droEre2.scaffold_4690 14470288 95 + 18748788
UGGCUCGGUGUUUC-UUUGUUUUGCCUGAGCUUCAGUUAAUUAAAAAUUCGAAAUUAAUGCCAGCUGUCCGUCCGUUUUGGAUGG-AUUUACGGCGA
.(((((((.((...-........)))))))))...(((((((..........)))))))(((....((((((((.....))))))-))....))).. ( -27.70, z-score =  -2.19, R)
>consensus
UGCCGCGGUAUUUC_UUUGUUUUGCCUGAGCUUCAGUUAAUUAAAAAUUCGAAAUUAAUGCCAGUUGUCCGUCCGUUUUGGAUGG_AUUUACGGCGG
......((((((...((((..((.....(((....))).......))..))))...)))))).(((((((((((.....)))))).....))))).. (-21.24 = -20.92 +  -0.32)

alignment

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secondary structure

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dotplot

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Window 4

Location 10,852,188 – 10,852,279
Length 91
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 80.53
Shannon entropy 0.31330
G+C content 0.39036
Mean single sequence MFE -21.42
Consensus MFE -17.69
Energy contribution -17.88
Covariance contribution 0.19
Combinations/Pair 1.17
Mean z-score -2.18
Structure conservation index 0.83
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.06
SVM RNA-class probability 0.981055
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 10852188 91 - 22422827
CUGUAAUUUCUAUGUGACCGCUAAAACUUUCUUUUUGGCUGGCUAGCUGAC-UGACUGGCUUUGUGUUAUUUCAUACGAA-UUUCAU------CGUAUG------
.............(((((((((((((......))))))).(((((((....-.).))))))..).)))))..(((((((.-.....)------))))))------ ( -20.80, z-score =  -2.90, R)
>droSim1.chrX 8405539 93 - 17042790
CUGUAAUUUCUAAGUGACCGCUAAAACUUUCUUUUUGGCCAGCUAGCUGACUUGGCUGGCUUUGUGUUAUUUCAUACGAAUUUUCAU------CGUGUG------
...........(((((((((((((((......))))))).((((((((.....))))))))..).)))))))(((((((.......)------))))))------ ( -26.10, z-score =  -3.44, R)
>droSec1.super_15 1554501 92 - 1954846
CUGUAAUUUCUAAGUGACCGCUAAAACUUUCUUUUUGGCUAGCUAGCUGACUUGGCUGGCUUUGUGUUAUUUCAUACGAA-UUUCAU------CGUGUG------
...........(((((((((((((((......))))))).((((((((.....))))))))..).)))))))(((((((.-.....)------))))))------ ( -26.90, z-score =  -4.07, R)
>droYak2.chrX 10498769 86 + 21770863
GUGUAAUUUCUAAGUGACCGCUAAAACUUUCUUUUUGGCUGGCU------------GGGUUUUGUGUUAUUUCAUACGAA-UUUCAUACGAAUCGUAUG------
(..(((..((((.((.(..(((((((......)))))))).)))------------)))..)))..).....(((((((.-.(((....))))))))))------ ( -16.50, z-score =  -1.11, R)
>droEre2.scaffold_4690 14470383 91 + 18748788
GUGUAAUUUCUAAGUGACCGCUAAGACUUUCUUUUUGGCUGGCC-------------GGCUUUGUGUUAUUUCAUACGAA-UUUCAUACGGGACGUACGAGUAUG
.((((..((((..(((((((((((((......))))))).))..-------------...(((((((......)))))))-..))))..))))..))))...... ( -16.80, z-score =   0.64, R)
>consensus
CUGUAAUUUCUAAGUGACCGCUAAAACUUUCUUUUUGGCUGGCUAGCUGAC_UG_CUGGCUUUGUGUUAUUUCAUACGAA_UUUCAU______CGUAUG______
...........(((((((((((((((......))))))).((((((((.....))))))))..).)))))))((((((...............))))))...... (-17.69 = -17.88 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:41 2011