| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,827,719 – 10,827,816 |
| Length | 97 |
| Max. P | 0.545240 |
| Location | 10,827,719 – 10,827,816 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 82.15 |
| Shannon entropy | 0.29997 |
| G+C content | 0.46263 |
| Mean single sequence MFE | -20.66 |
| Consensus MFE | -16.94 |
| Energy contribution | -16.70 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10827719 97 + 22422827 -----------AAAAAUGUAAUUGACUUCCAAAUCAAUAUCUUCUAACCUACAUACACAUAUGCCGCCCCUGGAGUCAAAGUACCAUCUUUGGCGGCGGCACCUCCGU -----------....((((((((((........)))))...........))))).......(((((((......(((((((......))))))))))))))....... ( -22.10, z-score = -2.42, R) >droSim1.chrX 8391096 97 + 17042790 -----------AAAAAUGUAAUUGACUACCAAAGUAAUAUCUUCUAACCUACAUACACACAUGCCGCCCCUGGAGUCAAAGUCCCAUCUUUGGUGGCGGCACCUCCGU -----------....(((((.(((.....)))((......)).......))))).......(((((((.(..(((............)))..).)))))))....... ( -20.00, z-score = -1.04, R) >droSec1.super_15 1530850 97 + 1954846 -----------AAAAAUGUAAUUGACUUCCAAAGCAAUAUCUUCUAACCUACAUACACACAUGUCGCCCCUGGAGUCAAAGUCCCAUCUUUGGCGGCGGCACCUUCGU -----------....(((((((((.((.....))))))...........))))).......(((((((......(((((((......))))))))))))))....... ( -18.90, z-score = -0.85, R) >droYak2.chrX 10477799 91 - 21770863 -----------------UUGUACAUCUACCAAACCAAUAUCUGUUAACCUACAUACACGUAUGGCGCCCCUGGAGUCGAAGCCCCAUCUUUGGCGGCGGCACCUCCGU -----------------................(((.(((.(((..........))).)))))).......((((..(..((((((....))).)))..)..)))).. ( -19.80, z-score = 0.23, R) >droEre2.scaffold_4690 14448162 108 - 18748788 AAAUGUUGCGAGUAAAUUUAUUUGACUACCAAACCAAUAUCUUUUAACCUACAUACACAUAUGCCGCCCAUGGAGUCAAAGCCCCAUCUUUGGCGGCGGCACCUCCUU ....((((.(((...(((..((((.....))))..)))..))).)))).............(((((((......(((((((......))))))))))))))....... ( -22.50, z-score = -1.35, R) >consensus ___________AAAAAUGUAAUUGACUACCAAACCAAUAUCUUCUAACCUACAUACACAUAUGCCGCCCCUGGAGUCAAAGUCCCAUCUUUGGCGGCGGCACCUCCGU .............................................................(((((((......(((((((......))))))))))))))....... (-16.94 = -16.70 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:38 2011