Locus 14050

Sequence ID dm3.chrX
Location 10,827,471 – 10,827,575
Length 104
Max. P 0.515931
window19319

overview

Window 9

Location 10,827,471 – 10,827,575
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 90.48
Shannon entropy 0.16713
G+C content 0.34038
Mean single sequence MFE -17.95
Consensus MFE -13.39
Energy contribution -13.83
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -1.88
Structure conservation index 0.75
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.04
SVM RNA-class probability 0.515931
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 10827471 104 - 22422827
AAUUAAAUACAGCCUUUUCGAUUUCAUUAAGCUUAAACUAAACAAAAUUUCCCAGGCGAAAUUGAUUUUUGAUGCCUCCAAUUAUCGCAUCAUCCAAAUCGAUU
...........((((....(((((..((.((......)).))..)))))....))))..(((((((((.((((((...........))))))...))))))))) ( -17.90, z-score =  -2.48, R)
>droSim1.chrX 8390848 104 - 17042790
AAUUAAAUACAGCCUUUUCGAUUUCAUUAAGCUUAAGCCUAACAUAACAUCCCAGGCGAAAUUGAUUUUUGAUGCCUCCAAUUAUCGCAUCAUCCAAAUCGAUU
...........((((...........(((.((....)).)))...........))))..(((((((((.((((((...........))))))...))))))))) ( -18.35, z-score =  -2.47, R)
>droSec1.super_15 1530604 104 - 1954846
AAUUAAAUACAGCCUUUUCGAUUUCAUUAAGCUUAAGCCAAACAAAACUUCCCAGGCGGAAUUGAUUUUUGAUGCCUCCAAUUAUCGCAUCAUCCAAAUCGAUU
...........((((...............((....))...............))))..(((((((((.((((((...........))))))...))))))))) ( -17.71, z-score =  -1.53, R)
>droYak2.chrX 10477537 104 + 21770863
UAUUAAACGCCGUCUUUUCGAUUUCAUUAAGUCAAAACUAAACAAAAGUUCCCAGGCGAAAUUGAUUUUGGAUGCCUCCAAUUAUCGCAUCAUCCAAAUCGAUU
.......((((........(((((....)))))..((((.......))))....)))).(((((((((..(((((...........)))))....))))))))) ( -19.90, z-score =  -2.16, R)
>droEre2.scaffold_4690 14447861 104 + 18748788
AUUUAAGCACUGUAUUUUCGAUUUCAUUAAGUUAAAACUAAGCAAAAGUUCCCAGGCGAAAUUGAUUUUUGAUGCCUCCAAUUAUCGCAUCAUCCAAAUCGAUU
......((.(((.......(((((....)))))..((((.......))))..)))))..(((((((((.((((((...........))))))...))))))))) ( -15.90, z-score =  -0.75, R)
>consensus
AAUUAAAUACAGCCUUUUCGAUUUCAUUAAGCUUAAACUAAACAAAACUUCCCAGGCGAAAUUGAUUUUUGAUGCCUCCAAUUAUCGCAUCAUCCAAAUCGAUU
...........((((..............(((....)))..............))))..(((((((((.((((((...........))))))...))))))))) (-13.39 = -13.83 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:37 2011