Locus 14048

Sequence ID dm3.chrX
Location 10,814,895 – 10,814,997
Length 102
Max. P 0.574821
window19317

overview

Window 7

Location 10,814,895 – 10,814,997
Length 102
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 91.72
Shannon entropy 0.14531
G+C content 0.38742
Mean single sequence MFE -23.12
Consensus MFE -20.68
Energy contribution -20.92
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.31
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.17
SVM RNA-class probability 0.574821
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 10814895 102 + 22422827
GAAUUAACAAACUAAACAUCUUAAGUUGGUGGUAAACGAUGCAGCGGCAUCAAAAUAAUUUUGAUACUAUGUGCAUCAUGGAAAC-GAAACAGCGGUUGCACC
................((((.......))))........((((((.((((((((.....)))))).(((((.....)))))....-......)).)))))).. ( -22.40, z-score =  -1.36, R)
>droEre2.scaffold_4690 14435206 102 - 18748788
GAAUUUACAAAGUAAACAUCCAAAGUUGGUG-UAAACGAUGCAGCGGCAUCAAAACAAUUUUGAUACUAUGUGCAUCAUGGAAACUGAAACGGCGGCUGCAUC
...........((..(((.(((....)))))-)..))((((((((.((((((((.....)))))).(((((.....)))))...........)).)))))))) ( -29.30, z-score =  -3.07, R)
>droYak2.chrX 10464892 103 - 21770863
GAAUUUACAGUAUAAACAUCCAAAGUUGGUGGUAAACGAUGCAGCGGCAGCAAAAUAAUUUUGAUACUAUGUGCAGCAUGGAAACUGAAACGGCGGUCGCAUC
...(((((.((....))..(((....)))..))))).(((((.((.((..((((.....))))...(((((.....)))))...........)).)).))))) ( -19.50, z-score =   0.76, R)
>droSec1.super_15 1517899 102 + 1954846
GAAUUAACAAAAUAAACAUCUUAUGUUGGUGGUAAACGAUGCAGCGGCAUCAAAAUAAUUUUGAUACUAUGUGAAUCAUGGAAAC-GAAACUGCGGUUGCACC
................((((.......))))........((((((.((((((((.....)))))).(((((.....)))))....-......)).)))))).. ( -22.20, z-score =  -1.54, R)
>droSim1.chrX 8377658 102 + 17042790
GAAUUAACAAAAUAAACAUCUUAAGUUGGUGGUAAACGAUGCAGCGGCAUCAAAAUAAUUUUGAUACUAUGUGCAUCAUGGAAAC-GAAACUGCGGUUGCACC
................((((.......))))........((((((.((((((((.....)))))).(((((.....)))))....-......)).)))))).. ( -22.20, z-score =  -1.32, R)
>consensus
GAAUUAACAAAAUAAACAUCUUAAGUUGGUGGUAAACGAUGCAGCGGCAUCAAAAUAAUUUUGAUACUAUGUGCAUCAUGGAAAC_GAAACGGCGGUUGCACC
................((((.......))))........((((((.((((((((.....)))))).(((((.....)))))...........)).)))))).. (-20.68 = -20.92 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:36 2011