| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,799,044 – 10,799,135 |
| Length | 91 |
| Max. P | 0.744483 |
| Location | 10,799,044 – 10,799,135 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 99.26 |
| Shannon entropy | 0.01009 |
| G+C content | 0.50924 |
| Mean single sequence MFE | -25.87 |
| Consensus MFE | -24.67 |
| Energy contribution | -24.67 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.744483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10799044 91 - 22422827 GUUUCGCUGUCUCGGUGGCGCAUGCGCAAAAAAACCGAGCAGAAUGACGAAGAAAGGUAGCGGAAGAAGCAGAAACAGAAGCAAAGGUGGU (((((.(((.((((((.(((....)))......)))))))))..............((..(....)..)).)))))............... ( -25.40, z-score = -1.41, R) >droSim1.chrU 15215357 90 - 15797150 GUUUCGCUGUCUCGGUGGCGCAUGCGC-AAAAAACCGAGCAGAAUGACGAAGAAAGGUAGCGGAAGAAGCAGAAACAGAAGCAAAGGUGGU (((((.(((.((((((.(((....)))-.....)))))))))..............((..(....)..)).)))))............... ( -26.10, z-score = -1.61, R) >droSec1.super_15 1502158 90 - 1954846 GUUUCGCUGUCUCGGUGGCGCAUGCGC-AAAAAACCGAGCAGAAUGACGAAGAAAGGUAGCGGAAGAAGCAGAAACAGAAGCAAAGGUGGU (((((.(((.((((((.(((....)))-.....)))))))))..............((..(....)..)).)))))............... ( -26.10, z-score = -1.61, R) >consensus GUUUCGCUGUCUCGGUGGCGCAUGCGC_AAAAAACCGAGCAGAAUGACGAAGAAAGGUAGCGGAAGAAGCAGAAACAGAAGCAAAGGUGGU (((((.(((.((((((.(((....)))......)))))))))..............((..(....)..)).)))))............... (-24.67 = -24.67 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:33 2011