| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,798,510 – 10,798,617 |
| Length | 107 |
| Max. P | 0.608985 |
| Location | 10,798,510 – 10,798,617 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 85.23 |
| Shannon entropy | 0.20413 |
| G+C content | 0.55160 |
| Mean single sequence MFE | -21.67 |
| Consensus MFE | -20.27 |
| Energy contribution | -19.83 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608985 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10798510 107 + 22422827 UACGAUCACGAUCGUCGUCUCGAUCCCCAUCCCCACUUCCCACUUCCCAAGCUUAUGACAUGAGCGCGUCCGAGCA---AUCGCCAGUAACCGCCAAGAAGUGUUGUGCG ...(((...(((((......)))))...)))..(((....((((((....((((((...))))))((...(((...---.)))...)).........))))))..))).. ( -23.60, z-score = -1.42, R) >droSec1.super_15 1501630 105 + 1954846 UACGAUCACGAUCGCC--UGCGAUCCCCAUCCCCACUUCUCACUUCCCAAGCUUAUGACAUGAGCACGUCCGAGCA---AUCGCCAGUAACCGCCAAGAAGUGUUGUGCG ...(((...(((((..--..)))))...)))..(((....((((((....((((((...))))))((...(((...---.)))...)).........))))))..))).. ( -24.70, z-score = -2.06, R) >droYak2.chrX 10448072 96 - 21770863 UACGAUCACGAUCGCC---UCGAUCCCCA-----------CACUUCCUAAGUUUAUGACAUGAGCACGUCCGAGCAGCAAUCGCCAGUAACCGCCAAGAAGUGCUGUGCG ......((((((((..---.)))))....-----------((((((....((((..(((........))).)))).((....)).............))))))..))).. ( -16.70, z-score = 0.74, R) >consensus UACGAUCACGAUCGCC___UCGAUCCCCAUCCCCACUUC_CACUUCCCAAGCUUAUGACAUGAGCACGUCCGAGCA___AUCGCCAGUAACCGCCAAGAAGUGUUGUGCG ......((((((((......)))))...............((((((....((((((...))))))((...(((.......)))...)).........))))))..))).. (-20.27 = -19.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:32:32 2011